Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03-
31] 78,595 sequences; 2,365,766,571 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq30 176 5e-39
seq78569 129 7e-25
>seq30
Length=9398747
Score = 176 bits (194), Expect = 5e-39
Identities = 639/990 (65%), Gaps = 15/990 (2%)
Strand=Plus/Plus
Query 160049 TCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATT 160108
|| || || ||| |||| || || | || || |||||| || || || || ||
Sbjct 5819444 TCTCAAATATTCTTCCAAGCACTGAATTGCAAAGGGGTCAACATCAGTATCAAACTTGTT 5819503
Query 160109 TGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCA 160168
|| || || ||||| ||||||| ||||||| || |||||| || ||||| ||
Sbjct 5819504 GGCAAATAGGTGGTGT---TTCTGTAACATCCAGTTCAAGTCTCCCACACCAAACACACA 5819560
Query 160169 GACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACC 160228
|| || || | || | || ||||| || || || | || ||||| | || || ||
Sbjct 5819561 CACAGAGCGCACATGAATTCCATTGCACGGAGGATAGGGGGCACCTTTTGAAACATCCCC 5819620
Query 160229 TTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTT 160288
||| | || |||||||||||||||||||| | || | |||||| || || || ||
Sbjct 5819621 TTCAAAATAATGCCACTTCACAAACCTGGCAAGAGCATTCATGTCAGAAACATCATACTT 5819680
Query 160289 GTACATCAG-GGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGT 160347
|| || || | ||| || || || || | || || | || | || ||||||| ||
Sbjct 5819681 GT-CACTAGAAGAAACTGCCCCTGGGACTTCAGGGATTCTTTGAATAGTAGCCCACAAGT 5819739
Query 160348 GTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCC 160407
||| || ||||| || ||||| |||| |||||| || || || |||| ||||
Sbjct 5819740 ATTCATCAGGGCTATAAGTGTCTTTAGCCCATTCAATAAATTCAAGGATTTTGCTGTTGT 5819799
Query 160408 GCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCG 160467
|| || | || | || | | ||||| || || ||||| ||||| | |
Sbjct 5819800 CTAGCACATACTCTACAAAACTCCTACTAGCAACAAAATAGGCACTGCCAGAGAAAACAG 5819859
Query 160468 GTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCA 160527
|| | | ||| || | | |||||| || |||| | | || | || |
Sbjct 5819860 GTGTACTAAGAGGTGGAGGTTGTTTGTCTATTCCCATGTTCTTTAGCTTACCATCAACAA 5819919
Query 160528 GCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGC--GGTGGCATGCGTTCCGTCTCTAG 160585
| | | || ||||| | | |||| ||| | ||||| || || ||||
Sbjct 5819920 TTTCATAGTGTTTTTTCCATC-GTATTTCTT-TGCTGGAAGGCATTTTCTCAGTTTCTAA 5819977
Query 160586 ACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGG 160645
||||| |||| | || | ||||| | || || || || |||| ||||| | ||
Sbjct 5819978 GCTGTTTTCACCCTTTAGGGCTTTCAATTTCTCCACCATTTCCTGGTTGGTCTTAATAGG 5820037
Query 160646 AAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTC 160705
|||||| |||| || | ||||||| || ||||| || | || || || ||
Sbjct 5820038 AAAGTCCATACCACAAAGATTTATCAAATATTTCCAGTTTGTACTTCTCCTGTAGAGATC 5820097
Query 160706 CCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAG 160765
||||||| || | |||||||| || | |||||| ||||| |||||||| |||| |
Sbjct 5820098 TTTCATGCAGTTGAGGTCTGCCTGTACCCTGCTCCACGAAGCATACACTACACTCTCCAA 5820157
Query 160766 TTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCC---ACCACCGCCAGAAA 160822
|| ||||| | |||||| |||| |||||| ||||| |||||| || | |||||||
Sbjct 5820158 TTGGCTGGCAATAAAGACATTATTGAAACAGGACACAATTCCCTTAACTGCTGCCAGAA- 5820216
Query 160823 GAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882
|| || | | |||| ||| || || | ||| || |||||||| || |||||
Sbjct 5820217 -AAGAT-TCTGGAGACTTTTTGTCAACATGAATGCAGTAATAATTCTGAGGAGCATAGAT 5820274
Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942
| || || | || || | ||| ||||| || |||| | ||| || || ||||| ||
Sbjct 5820275 TGATCTTAGAAGTCTATCAAGCATGTCTATTTTGTGATATACCACTATTGAATAGGCAAT 5820334
Query 160943 CGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAA 161002
||||| | | || || ||| || | | | | || || ||| ||||| ||||
Sbjct 5820335 TGGAAATCCAGCTTCTTCTTTACTGAGAGGTTCCATAATATATTTCCGCATCTTGGTAAA 5820394
Query 161003 ATAATCACAATCCCGCGTCATGTTGATATA 161032
| | ||||||| ||||| || || ||
Sbjct 5820395 AGAGGCACAATCTGTTGTCATATTAATGTA 5820424
>seq78569
Length=9971662
Score = 129 bits (142), Expect = 7e-25
Identities = 236/343 (69%), Gaps = 2/343 (1%)
Strand=Plus/Minus
Query 160619 GACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTT 160678
||| ||||| ||| || |||| || || ||||| ||||| ||||| | ||| |
Sbjct 6849130 GACAATCTCGGCGTTAGTTTTGATGGGGAAATCGGTGCCGCAAGTGTTTAAGAGATACCT 6849071
Query 160679 CCATTTCGCGCTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCT 160738
||| | || | | | | || ||| |||||| || | || || || || |||
Sbjct 6849070 CCAGGGCACGTTGCTCTTGAGTAGCTCCTCCATGCAGTTCAGGTCCGCTTGGACCCGGGA 6849011
Query 160739 CCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGA 160798
|||||| ||||||||||| |||| |||||| ||||||||||||| || ||||| || ||
Sbjct 6849010 CCAGGATGCGTACACTACTCTCTCCAGTTTAGTGGCCACAAAGACATTTTCGAAGCAGGA 6848951
Query 160799 CACGATTCCCACCACCGCCAGAAAGAACATCTTATCCGCCTTTC-GGTCCACGTGCACGC 160857
|||| || || ||| ||| || | | |||| | || ||||| || |
Sbjct 6848950 GGCGATCCCTCGGACTGCCTCCTTGAA-TTCGTCCGGGGATTTCAGATCTACGTGGACAC 6848892
Query 160858 AATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTAT 160917
| || | ||||| |||| |||||||| ||| | ||| || ||||||||||| ||||| |
Sbjct 6848891 AGTATATATTCTGGGGCGTGTAGATGGACCTTAACAATCTTTCGAACATCTCAATCTTCT 6848832
Query 160918 GATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTC 160960
||| | || || || || || || ||||| || ||||||
Sbjct 6848831 CATGCACTACCATGGAATATGCAATAGGAAAATCTTCCTCCTC 6848789
Score = 82.4 bits (90), Expect = 9e-11
Identities = 219/334 (66%), Gaps = 3/334 (1%)
Strand=Plus/Minus
Query 160050 CGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTT 160109
|| |||| ||| |||||||| |||| ||| | || || | | ||| || || ||
Sbjct 6849693 CGTAGATATTCCTCCAGACACTGGATTGCGTTTTCATCTACATTTGGGTCAAACTTGTTG 6849634
Query 160110 GCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAG 160169
|| | |||||| || ||| || || |||||||| | || || ||| |||| |||
Sbjct 6849633 GCTAGCAGATGATG---GTTTTGGAGCATCCAGTGAAGATCACCTACCCCATACACACAG 6849577
Query 160170 ACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCT 160229
|||| ||| ||| | || | || || ||||| | || ||||| || || ||
Sbjct 6849576 ACGGCCCGTTGGTGGGCACCCGTACACGGAGGGTAGGGTGCCCCTTTGCTGACATCGCCC 6849517
Query 160230 TCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTG 160289
|| ||| ||||||||| || || || | || | | || ||| || || ||
Sbjct 6849516 TCCAGGTAGGACCACTTCACCAATCTAGCAACAGCATTGACATCAGAGACCTCATACTTA 6849457
Query 160290 TACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGT 160349
| | || || | || || | ||| ||||| || || ||||||||||| | | |
Sbjct 6849456 TCGTTATAAGGCACCGATCCTGGCATGCCTGGCATCCGGTGGAGGGTGGCCCAAATATAT 6849397
Query 160350 TCGTCGGGGCTGTACGTGTCCTTAGACCATTCCA 160383
|| || |||||||| || || || ||||| ||||
Sbjct 6849396 TCATCTGGGCTGTAAGTATCTTTTGACCACTCCA 6849363
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 576652118212200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |