Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq30 176 5e-39 seq78569 129 7e-25 >seq30 Length=9398747 Score = 176 bits (194), Expect = 5e-39 Identities = 639/990 (65%), Gaps = 15/990 (2%) Strand=Plus/Plus Query 160049 TCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATT 160108 || || || ||| |||| || || | || || |||||| || || || || || Sbjct 5819444 TCTCAAATATTCTTCCAAGCACTGAATTGCAAAGGGGTCAACATCAGTATCAAACTTGTT 5819503 Query 160109 TGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCA 160168 || || || ||||| ||||||| ||||||| || |||||| || ||||| || Sbjct 5819504 GGCAAATAGGTGGTGT---TTCTGTAACATCCAGTTCAAGTCTCCCACACCAAACACACA 5819560 Query 160169 GACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACC 160228 || || || | || | || ||||| || || || | || ||||| | || || || Sbjct 5819561 CACAGAGCGCACATGAATTCCATTGCACGGAGGATAGGGGGCACCTTTTGAAACATCCCC 5819620 Query 160229 TTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTT 160288 ||| | || |||||||||||||||||||| | || | |||||| || || || || Sbjct 5819621 TTCAAAATAATGCCACTTCACAAACCTGGCAAGAGCATTCATGTCAGAAACATCATACTT 5819680 Query 160289 GTACATCAG-GGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGT 160347 || || || | ||| || || || || | || || | || | || ||||||| || Sbjct 5819681 GT-CACTAGAAGAAACTGCCCCTGGGACTTCAGGGATTCTTTGAATAGTAGCCCACAAGT 5819739 Query 160348 GTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCC 160407 ||| || ||||| || ||||| |||| |||||| || || || |||| |||| Sbjct 5819740 ATTCATCAGGGCTATAAGTGTCTTTAGCCCATTCAATAAATTCAAGGATTTTGCTGTTGT 5819799 Query 160408 GCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCG 160467 || || | || | || | | ||||| || || ||||| ||||| | | Sbjct 5819800 CTAGCACATACTCTACAAAACTCCTACTAGCAACAAAATAGGCACTGCCAGAGAAAACAG 5819859 Query 160468 GTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCA 160527 || | | ||| || | | |||||| || |||| | | || | || | Sbjct 5819860 GTGTACTAAGAGGTGGAGGTTGTTTGTCTATTCCCATGTTCTTTAGCTTACCATCAACAA 5819919 Query 160528 GCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGC--GGTGGCATGCGTTCCGTCTCTAG 160585 | | | || ||||| | | |||| ||| | ||||| || || |||| Sbjct 5819920 TTTCATAGTGTTTTTTCCATC-GTATTTCTT-TGCTGGAAGGCATTTTCTCAGTTTCTAA 5819977 Query 160586 ACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGG 160645 ||||| |||| | || | ||||| | || || || || |||| ||||| | || Sbjct 5819978 GCTGTTTTCACCCTTTAGGGCTTTCAATTTCTCCACCATTTCCTGGTTGGTCTTAATAGG 5820037 Query 160646 AAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTC 160705 |||||| |||| || | ||||||| || ||||| || | || || || || Sbjct 5820038 AAAGTCCATACCACAAAGATTTATCAAATATTTCCAGTTTGTACTTCTCCTGTAGAGATC 5820097 Query 160706 CCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAG 160765 ||||||| || | |||||||| || | |||||| ||||| |||||||| |||| | Sbjct 5820098 TTTCATGCAGTTGAGGTCTGCCTGTACCCTGCTCCACGAAGCATACACTACACTCTCCAA 5820157 Query 160766 TTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCC---ACCACCGCCAGAAA 160822 || ||||| | |||||| |||| |||||| ||||| |||||| || | ||||||| Sbjct 5820158 TTGGCTGGCAATAAAGACATTATTGAAACAGGACACAATTCCCTTAACTGCTGCCAGAA- 5820216 Query 160823 GAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882 || || | | |||| ||| || || | ||| || |||||||| || ||||| Sbjct 5820217 -AAGAT-TCTGGAGACTTTTTGTCAACATGAATGCAGTAATAATTCTGAGGAGCATAGAT 5820274 Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942 | || || | || || | ||| ||||| || |||| | ||| || || ||||| || Sbjct 5820275 TGATCTTAGAAGTCTATCAAGCATGTCTATTTTGTGATATACCACTATTGAATAGGCAAT 5820334 Query 160943 CGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAA 161002 ||||| | | || || ||| || | | | | || || ||| ||||| |||| Sbjct 5820335 TGGAAATCCAGCTTCTTCTTTACTGAGAGGTTCCATAATATATTTCCGCATCTTGGTAAA 5820394 Query 161003 ATAATCACAATCCCGCGTCATGTTGATATA 161032 | | ||||||| ||||| || || || Sbjct 5820395 AGAGGCACAATCTGTTGTCATATTAATGTA 5820424 >seq78569 Length=9971662 Score = 129 bits (142), Expect = 7e-25 Identities = 236/343 (69%), Gaps = 2/343 (1%) Strand=Plus/Minus Query 160619 GACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTT 160678 ||| ||||| ||| || |||| || || ||||| ||||| ||||| | ||| | Sbjct 6849130 GACAATCTCGGCGTTAGTTTTGATGGGGAAATCGGTGCCGCAAGTGTTTAAGAGATACCT 6849071 Query 160679 CCATTTCGCGCTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCT 160738 ||| | || | | | | || ||| |||||| || | || || || || ||| Sbjct 6849070 CCAGGGCACGTTGCTCTTGAGTAGCTCCTCCATGCAGTTCAGGTCCGCTTGGACCCGGGA 6849011 Query 160739 CCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGA 160798 |||||| ||||||||||| |||| |||||| ||||||||||||| || ||||| || || Sbjct 6849010 CCAGGATGCGTACACTACTCTCTCCAGTTTAGTGGCCACAAAGACATTTTCGAAGCAGGA 6848951 Query 160799 CACGATTCCCACCACCGCCAGAAAGAACATCTTATCCGCCTTTC-GGTCCACGTGCACGC 160857 |||| || || ||| ||| || | | |||| | || ||||| || | Sbjct 6848950 GGCGATCCCTCGGACTGCCTCCTTGAA-TTCGTCCGGGGATTTCAGATCTACGTGGACAC 6848892 Query 160858 AATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTAT 160917 | || | ||||| |||| |||||||| ||| | ||| || ||||||||||| ||||| | Sbjct 6848891 AGTATATATTCTGGGGCGTGTAGATGGACCTTAACAATCTTTCGAACATCTCAATCTTCT 6848832 Query 160918 GATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTC 160960 ||| | || || || || || || ||||| || |||||| Sbjct 6848831 CATGCACTACCATGGAATATGCAATAGGAAAATCTTCCTCCTC 6848789 Score = 82.4 bits (90), Expect = 9e-11 Identities = 219/334 (66%), Gaps = 3/334 (1%) Strand=Plus/Minus Query 160050 CGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTT 160109 || |||| ||| |||||||| |||| ||| | || || | | ||| || || || Sbjct 6849693 CGTAGATATTCCTCCAGACACTGGATTGCGTTTTCATCTACATTTGGGTCAAACTTGTTG 6849634 Query 160110 GCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAG 160169 || | |||||| || ||| || || |||||||| | || || ||| |||| ||| Sbjct 6849633 GCTAGCAGATGATG---GTTTTGGAGCATCCAGTGAAGATCACCTACCCCATACACACAG 6849577 Query 160170 ACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCT 160229 |||| ||| ||| | || | || || ||||| | || ||||| || || || Sbjct 6849576 ACGGCCCGTTGGTGGGCACCCGTACACGGAGGGTAGGGTGCCCCTTTGCTGACATCGCCC 6849517 Query 160230 TCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTG 160289 || ||| ||||||||| || || || | || | | || ||| || || || Sbjct 6849516 TCCAGGTAGGACCACTTCACCAATCTAGCAACAGCATTGACATCAGAGACCTCATACTTA 6849457 Query 160290 TACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGT 160349 | | || || | || || | ||| ||||| || || ||||||||||| | | | Sbjct 6849456 TCGTTATAAGGCACCGATCCTGGCATGCCTGGCATCCGGTGGAGGGTGGCCCAAATATAT 6849397 Query 160350 TCGTCGGGGCTGTACGTGTCCTTAGACCATTCCA 160383 || || |||||||| || || || ||||| |||| Sbjct 6849396 TCATCTGGGCTGTAAGTATCTTTTGACCACTCCA 6849363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576652118212200