Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq599 150 2e-30 seq158 120 4e-21 seq295 98.7 1e-14 seq213 98.7 1e-14 seq395 95.1 1e-13 >seq599 Length=184155 Score = 150 bits (166), Expect = 2e-30 Identities = 154/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| ||| | |||||||||||||||||||||||| || | | ||| | Sbjct 36094 TGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGAGGTGATGG 36153 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| | |||||||| || ||||| ||||||| |||| |||| Sbjct 36154 TGGAGCGCTTGTTGTAATGCGCCAGGCGAGACGCCTCCCCAGCGATGCGCTCGAAGATGT 36213 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 | ||||| || |||||||||| ||| | |||| |||||||| ||||||||| | Sbjct 36214 CATTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAAGAGATGCCGGTGTCGGGGTGAA 36273 Query 1254526 CCTGCTTGAGCACCTTGTAGA 1254546 ||||||| ||||||||||||| Sbjct 36274 CCTGCTTCAGCACCTTGTAGA 36294 Score = 150 bits (166), Expect = 2e-30 Identities = 154/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| ||| | |||||||||||||||||||||||| || | | ||| | Sbjct 42942 TGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGAGGTGATGG 43001 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| | |||||||| || ||||| ||||||| |||| |||| Sbjct 43002 TGGAGCGCTTGTTGTAATGCGCCAGGCGAGACGCCTCCCCAGCGATGCGCTCGAAGATGT 43061 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 | ||||| || |||||||||| ||| | |||| |||||||| ||||||||| | Sbjct 43062 CATTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAAGAGATGCCGGTGTCGGGGTGAA 43121 Query 1254526 CCTGCTTGAGCACCTTGTAGA 1254546 ||||||| ||||||||||||| Sbjct 43122 CCTGCTTCAGCACCTTGTAGA 43142 Score = 150 bits (166), Expect = 2e-30 Identities = 154/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| ||| | |||||||||||||||||||||||| || | | ||| | Sbjct 74636 TGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGAGGTGATGG 74577 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| | |||||||| || ||||| ||||||| |||| |||| Sbjct 74576 TGGAGCGCTTGTTGTAATGCGCCAGGCGAGACGCCTCCCCAGCGATGCGCTCGAAGATGT 74517 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 | ||||| || |||||||||| ||| | |||| |||||||| ||||||||| | Sbjct 74516 CATTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAAGAGATGCCGGTGTCGGGGTGAA 74457 Query 1254526 CCTGCTTGAGCACCTTGTAGA 1254546 ||||||| ||||||||||||| Sbjct 74456 CCTGCTTCAGCACCTTGTAGA 74436 Score = 150 bits (166), Expect = 2e-30 Identities = 154/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| ||| | |||||||||||||||||||||||| || | | ||| | Sbjct 87098 TGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGAGGTGATGG 87039 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| | |||||||| || ||||| ||||||| |||| |||| Sbjct 87038 TGGAGCGCTTGTTATAATGCGCCAGGCGAGACGCCTCCCCAGCGATGCGCTCGAAGATGT 86979 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 | ||||| || |||||||||| ||| | |||| |||||||| ||||||||| | Sbjct 86978 CATTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAAGAGATGCCGGTGTCGGGGTGAA 86919 Query 1254526 CCTGCTTGAGCACCTTGTAGA 1254546 ||||||| ||||||||||||| Sbjct 86918 CCTGCTTCAGCACCTTGTAGA 86898 >seq158 Length=2496286 Score = 120 bits (132), Expect = 4e-21 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| ||| | |||||||||||||||||||||||| | | | ||| | Sbjct 81708 TGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCGGTCTGGATCTCTTGGGAGGTGATGG 81649 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| | ||||||| | ||||| | |||| || | |||| Sbjct 81648 TGGAGCGCTTGTTATAATGCGCCAAGTGAGATGCCTCCCCAGCAATGCACTCAAAGATGT 81589 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 | |||||||| |||||||||| ||| | ||| |||||||| |||||| || | Sbjct 81588 CATTGACAAAGGAGTTCATGATGCCCATGGCCTTAGAAGAGATGCCGGTGTCGGGATGAA 81529 Query 1254526 CCTGCTTGAGCACCTTGTAGA 1254546 ||||||| ||||||||||||| Sbjct 81528 CCTGCTTCAGCACCTTGTAGA 81508 >seq295 Length=932878 Score = 98.7 bits (108), Expect = 1e-14 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | |||||| ||||||||||| | |||||| || || Sbjct 123717 GCTTGGCCAGCTCCCCCGGCAGCAGCAGGCGGACGGCGGTCTGCACCTCGCGGCTGGTGA 123658 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || || || || |||||| ||| | ||||| || | | Sbjct 123657 TGGTGGAGCGCTTGTTGTATTGTGCTAGGCGCGAGGCCTCTGTGGCAATGCGCTCAAAGA 123598 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 || || ||||| |||||||||| ||| | ||| ||||||||| ||| |||| Sbjct 123597 CATCATTCACAAAGGAGTTCATGATGCTCATGGCCTTAGAGGAGATGCCAGTGTCAGGGT 123538 Query 1254523 GCACCTG 1254529 | ||||| Sbjct 123537 GAACCTG 123531 >seq213 Length=1662576 Score = 98.7 bits (108), Expect = 1e-14 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || || ||| | ||||||||| |||||||||||||| || | ||| | Sbjct 1439398 TGGCCAGCTCCCCCGGCAGAAGCAGGCGCACAGCGGTCTGGATCTCCCGGGAAGTGATGG 1439457 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 | |||||||| | || ||||| || || || | ||||| |||| |||| Sbjct 1439458 TTGATCGCTTGTTGTAATGAGCCAGGCGAGACGCTTCCCCCGCAATGCGCTCGAAGATGT 1439517 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 |||| ||||| |||||||||| | ||| | ||| |||||| || ||| ||||| | Sbjct 1439518 CGTTCACAAAGGAGTTCATGATCCCCATGGCCTTAGAGGAGATACCGGTGTCCGGGTGAA 1439577 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 | || || ||||| ||||| Sbjct 1439578 CTTGTTTCAGCACTTTGTA 1439596 Score = 95.1 bits (104), Expect = 1e-13 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| || || ||| | ||||||||| |||||||||||||| || | ||| || Sbjct 1385200 GCCAGCTCCCCCGGCAGAAGCAGGCGCACAGCGGTCTGGATCTCCCGGGAAGTGATAGTT 1385141 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||||| | || ||||| || || || | ||||| |||| |||||| Sbjct 1385140 GAACGCTTGTTGTAATGAGCCAGGCGAGACGCTTCCCCCGCAATGCGCTCGAAGATGTCG 1385081 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 || ||||| |||||||||| | ||| | ||| |||||| || ||| ||||| || Sbjct 1385080 TTCACAAAGGAGTTCATGATCCCCATGGCCTTAGAGGAGATACCGGTGTCCGGGTGAACT 1385021 Query 1254528 TGCTTGAGCACCTTGTA 1254544 || || ||||| ||||| Sbjct 1385020 TGTTTCAGCACTTTGTA 1385004 Score = 93.3 bits (102), Expect = 5e-13 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || || ||| | ||||||||| |||||||||||||| || | ||| | Sbjct 1648156 TGGCCAGCTCCCCCGGCAAAAGCAGGCGCACAGCGGTCTGGATCTCCCGAGAAGTGATGG 1648097 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 | ||||||||| | || ||||| || || || |||| || |||| |||| Sbjct 1648096 TTGAGCGCTTGTTGTAATGAGCCAGGCGAGACGCTTCCCCAGCGATACGTTCGAAGATGT 1648037 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 |||| ||||| |||||||||| | ||| | || |||||| || ||| || || | Sbjct 1648036 CGTTTACAAAGGAGTTCATGATCCCCATGGCTTTAGAGGAGATACCGGTGTCAGGATGAA 1647977 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 | ||||| | |||||||| Sbjct 1647976 CTTGCTTCAATACCTTGTA 1647958 >seq395 Length=513518 Score = 95.1 bits (104), Expect = 1e-13 Identities = 100/128 (78%), Gaps = 4/128 (3%) Strand=Plus/Minus Query 509035 GCCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGAT 509094 ||| |||||||| ||||||||| ||||| ||| | |||||| | | ||| || Sbjct 482490 GCCGGAGAGCCGGGGCTTTGTGGAGAACTCCTACCTGGCCGGCCTGACGCCCACCGA-AT 482432 Query 509095 GTTTCTGCACATG--ATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCC 509152 |||| | |||| || |||||||||||||||||| ||||||||||||||||||| ||| Sbjct 482431 TCTTCTTC-CATGCCATGGGCGGGCGCGAGGGCCTCATCGACACGGCCGTCAAGACAGCC 482373 Query 509153 GAGACGGG 509160 ||||| || Sbjct 482372 GAGACCGG 482365 Score = 89.7 bits (98), Expect = 6e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 |||||||||||| |||||| ||||||||||| |||| ||| | |||||| | |||||| Sbjct 476743 CGTCATCTCCTTCGACGGCTCCTACGTCAACTACCGGCACCTGGCGCTGCTCTGCGACAC 476684 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGC 512161 |||| |||||| || | ||||| |||| || ||||| |||||||| Sbjct 476683 CATGACCTGCCGTGGGCACCTCATGGCCATCACCCGGCACGGGGTCAACCGC 476632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6100689326239615