Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03-
31] 78,595 sequences; 2,365,766,571 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq78565 134 9e-27
seq39 134 9e-27
>seq78565
Length=14964121
Score = 134 bits (148), Expect = 9e-27
Identities = 160/215 (74%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|||||||| ||| | ||| || ||||| ||||| ||||| || ||| ||||| ||||
Sbjct 6184419 CAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 6184360
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
||||| ||||||||||| |||||||| | ||||||||| | || | || || |||||
Sbjct 6184359 TTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTC 6184300
Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942
| ||||| |||||| || || || | || ||| ||| || || | ||| |||
Sbjct 6184299 TTGGATTTTGGCTTTGAC--ATTCTCAATGGTGTCGCTGGGCTCTACCTCTAGGGTGATG 6184242
Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || ||||| | ||| || ||||||||||||||
Sbjct 6184241 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6184207
Score = 131 bits (144), Expect = 1e-25
Identities = 159/215 (74%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|||||||| ||| | ||| || ||||| ||||| ||||| || ||| ||||| ||||
Sbjct 6183963 CAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 6183904
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
||||| ||||||||||| |||||||| | ||||||||| | || | || || |||||
Sbjct 6183903 TTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTC 6183844
Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942
| ||||| ||||| || || || | || ||| ||| || || | ||| |||
Sbjct 6183843 TTGGATTTTGGCCTTGAC--ATTCTCAATGGTGTCGCTGGGCTCTACTTCCAGGGTGATG 6183786
Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || ||||| | ||| || ||||||||||||||
Sbjct 6183785 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6183751
Score = 131 bits (144), Expect = 1e-25
Identities = 159/215 (74%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|||||||| ||| | ||| || ||||| ||||| ||||| || ||| ||||| ||||
Sbjct 6184191 CAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 6184132
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
||||| ||||||||||| |||||||| | ||||||||| | || | || || |||||
Sbjct 6184131 TTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTC 6184072
Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942
| ||||| ||||| || || || | || ||| ||| || || | ||| |||
Sbjct 6184071 CTGGATTTTGGCCTTGAC--ATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATG 6184014
Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || ||||| | ||| || ||||||||||||||
Sbjct 6184013 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6183979
>seq39
Length=8077485
Score = 134 bits (148), Expect = 9e-27
Identities = 169/230 (73%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| || |||| | ||| || ||||| | |||| ||||||||| ||||| ||||| ||
Sbjct 4823376 CCACCTCTCAGACGCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4823435
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
||| |||| |||| ||||| ||||| || || |||||||| | |||||||| | ||
Sbjct 4823436 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGG 4823495
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928
| || || ||||| | || || ||||| || || || | ||| ||| ||| |
Sbjct 4823496 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGAC--ATTCTCAATAGTGTCACTGGGCTCAA 4823553
Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
| || | ||| |||||||| || || |||||||| |||||||||||||||
Sbjct 4823554 CCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 4823603
Score = 132 bits (146), Expect = 3e-26
Identities = 168/229 (73%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| ||||||| | || || ||||| | ||| ||||||||| ||||| ||||| |||
Sbjct 4823148 CCACCCCTCAGACGCAACACAAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGAT 4823207
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
||| |||| |||| ||||| ||||| || || |||||||| | |||||||| | ||
Sbjct 4823208 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGG 4823267
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928
| || || ||||| | || || ||||| || || || | ||| ||| ||| |
Sbjct 4823268 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGAC--ATTCTCAATAGTGTCACTGGGCTCAA 4823325
Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
| || | ||| |||||||| || || |||||||| ||||||||||||||
Sbjct 4823326 CCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4823374
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325380826500305
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |