Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq78578 132 4e-25 >seq78578 Length=5143557 Score = 132 bits (146), Expect = 4e-25 Identities = 363/549 (66%), Gaps = 8/549 (1%) Strand=Plus/Plus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 |||||||| || ||||||||||||||||| | | | ||| || | ||| |||||||| Sbjct 2804510 GCACCATAAGCCACAGCTTCATCAGGATTGATGCTCTTATTCAGCTCTTTGCCATTGAAG 2804569 Query 281837 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 |||| || |||| ||| | ||| || || || | || || ||||| | |||||| Sbjct 2804570 AAATCCTGCAGCAGTT-TCTGAATCTTGGGGATTCGGGTAGACCCACCAACCAGTACAAT 2804628 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955 ||||| | ||||||||| || ||||| | |||| | | || || ||||| || || Sbjct 2804629 ATCATGGATCTGTGATTTGTCTAGTTTGGCATCCCGCAGGGCCTTCTCCACGGGATCCAG 2804688 Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 282015 | | | |||| || | | | ||||| || |||||| |||| | | | Sbjct 2804689 AGTGCCACGGAACAGATCAGCATTTAACTCTTCAAAACGAGCTCTGGTAATTGAGGTGTA 2804748 Query 282016 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 282075 | ||||||| || || | | ||| |||| ||||| | | ||||| ||| || || Sbjct 2804749 AAAATCAATGCCCTCATAGAGAGAGTCAATCTCAATACTGGCCTGAGTGCTAGAGGAGAG 2804808 Query 282076 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGAT-TGAT 282134 | ||| || ||||||||||| || || | || | || | || | | || | | | Sbjct 2804809 GGTACGCTTTGCACGTTCACAAGCAGTGCGGAGACGGCGAACTGC-TCTCTTGTTCTCAG 2804867 Query 282135 TCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATT 282192 | | || | || | || | |||||| || ||| | ||| | || | ||| || Sbjct 2804868 TAATGTCCTTCTTGTGCTTACGCTTGAATTCAGCAATGAA--ATGGTTGACCATACGGTT 2804925 Query 282193 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 282252 |||||| || || || ||||| | |||| |||| || | |||||| || | || Sbjct 2804926 ATCAAAGTCCTCCCCACCCAAGTGGGTATCACCTGCAGTTGACTTTACTTCAAAGATGCC 2804985 Query 282253 ATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 282312 ||| |||| || | | | ||||||| || |||||||| | ||||| ||||| || Sbjct 2804986 ATCCTCAATAGTGAGGATCGAAACATCAAAAGTGCCACCACCAAGGTCAAAGATAAGGAC 2805045 Query 282313 ATTCATTTC 282321 |||| |||| Sbjct 2805046 ATTCCTTTC 2805054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3736771717642470