Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03-
31] 78,595 sequences; 2,365,766,571 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq78565 167 5e-36
seq39 147 4e-30
seq3 105 1e-17
seq2 89.7 1e-12
>seq78565
Length=14964121
Score = 167 bits (184), Expect = 5e-36
Identities = 175/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| |||| | ||||| || ||||||||||| ||||||||||| || || || || |
Sbjct 6183979 TACCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGG 6183920
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| || | | || ||||| || || ||||| |||||||| || || || || |||||||
Sbjct 6183919 ACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAG 6183860
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || ||||| || ||||| || || || || ||||| ||||| || || | || ||||
Sbjct 6183859 GAATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTA 6183800
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
|||||| || || || ||||| ||||| || || ||||| |||||||||
Sbjct 6183799 CTTCCAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATT 6183750
Score = 158 bits (174), Expect = 2e-33
Identities = 164/215 (76%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
||||| || ||||||||||| ||||||||||| || || || || || || | | ||
Sbjct 6184421 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 6184362
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
||||| || || ||||| |||||||| || || || || |||||||| || ||||| ||
Sbjct 6184361 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 6184302
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
||||| || || ||||| ||||| ||||| || || | || ||||| || | || ||
Sbjct 6184301 TCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCGCTGGGCTCTACCTCTAGGGTGATG 6184242
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| ||||| ||||| || || ||||| ||||||||
Sbjct 6184241 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6184207
Score = 156 bits (172), Expect = 8e-33
Identities = 172/229 (75%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| |||| | ||||| || ||||||||||| ||||||||||| || || || || |
Sbjct 6184207 TACCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGG 6184148
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| || | | || ||||| || || ||||| |||||||| || || || || |||||||
Sbjct 6184147 ACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAG 6184088
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || ||||| || || || || || || || ||||| ||||| || || | || ||||
Sbjct 6184087 GAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTA 6184028
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||| | || || || ||||| ||||| || || ||||| ||||||||
Sbjct 6184027 CTTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6183979
>seq39
Length=8077485
Score = 147 bits (162), Expect = 4e-30
Identities = 170/229 (74%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| ||||||| |||||| || | ||| || || || || ||||| || || || ||||
Sbjct 4823374 TACCACCTCTCAGACGCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 4823433
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| || | | || ||||| || || || ||||||||||| || || || || || || |
Sbjct 4823434 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTG 4823493
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || ||||| || || || ||||| || || ||||| ||||| || ||| | || || |
Sbjct 4823494 GGATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCAA 4823553
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| || | || || |||||||| |||| ||||| ||||| ||||||||
Sbjct 4823554 CCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4823602
Score = 140 bits (154), Expect = 6e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| || |||| ||||| || | ||| || || || || ||||| || || || ||||||
Sbjct 4823148 CCACCCCTCAGACGCAACACAAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGAT 4823207
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | || ||||| || || || ||||||||||| || || || || || || ||
Sbjct 4823208 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGG 4823267
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| ||||| || || || ||||| || || ||||| ||||| || ||| | || || ||
Sbjct 4823268 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCAACC 4823327
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | || || |||||||| |||| ||||| ||||| ||||||||
Sbjct 4823328 TCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4823374
>seq3
Length=75876001
Score = 105 bits (116), Expect = 1e-17
Identities = 127/173 (73%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 60139 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGT 60198
|||||| | || ||||||||||||| | | || ||||| || || ||||| || || |
Sbjct 66048342 GATAGCTGGTGCTTTATGGTGGTACTTTGTCTCAAAAGGAATTGAGTACTTGGACACAAT 66048401
Query 60199 GTTTTTCATACTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTT 60258
|||||||| | ||||| || ||||| || | ||||| | || || ||||| |||||
Sbjct 66048402 ATTTTTCATCTTGAGGAAGAAATTTAACCAAATCAGTTTCCTTCATGTCTATCACCATTT 66048461
Query 60259 TACTATGTTTACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311
|||||||| || || | ||| | || || || ||| || | ||||| ||||
Sbjct 66048462 CACTATGTTCACCTTGTGGTGGATTGGTATCAAGTGGGTTCCAGGAGGACAAG 66048514
>seq2
Length=68452538
Score = 89.7 bits (98), Expect = 1e-12
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739
|| |||| ||| ||||| ||||| |||||||||||||| || ||||| || || ||||||
Sbjct 8820688 ATAAGTCATTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTCACATTT 8820629
Query 82740 TCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTAC 82798
|| || |||||| ||| || || || | || || || || || |||| ||||| ||
Sbjct 8820628 TCTATAGTATCAGAAGGCTCAACCTCAAGGGTGATGGTTTTCCCGGTCAGGGTCTTCAC 8820570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 980838501543705
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |