Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq78565 167 5e-36 seq39 147 4e-30 seq3 105 1e-17 seq2 89.7 1e-12 >seq78565 Length=14964121 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| | ||||| || ||||||||||| ||||||||||| || || || || | Sbjct 6183979 TACCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGG 6183920 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| || || ||||| |||||||| || || || || ||||||| Sbjct 6183919 ACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAG 6183860 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || ||||| || || || || ||||| ||||| || || | || |||| Sbjct 6183859 GAATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTA 6183800 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||| || || || ||||| ||||| || || ||||| ||||||||| Sbjct 6183799 CTTCCAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATT 6183750 Score = 158 bits (174), Expect = 2e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || ||||||||||| ||||||||||| || || || || || || | | || Sbjct 6184421 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 6184362 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || ||||| |||||||| || || || || |||||||| || ||||| || Sbjct 6184361 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 6184302 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| || || ||||| ||||| ||||| || || | || ||||| || | || || Sbjct 6184301 TCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCGCTGGGCTCTACCTCTAGGGTGATG 6184242 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| ||||| || || ||||| |||||||| Sbjct 6184241 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6184207 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| | ||||| || ||||||||||| ||||||||||| || || || || | Sbjct 6184207 TACCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGG 6184148 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| || || ||||| |||||||| || || || || ||||||| Sbjct 6184147 ACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAG 6184088 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || || || || || || || ||||| ||||| || || | || |||| Sbjct 6184087 GAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTA 6184028 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | || || || ||||| ||||| || || ||||| |||||||| Sbjct 6184027 CTTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6183979 >seq39 Length=8077485 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||||| |||||| || | ||| || || || || ||||| || || || |||| Sbjct 4823374 TACCACCTCTCAGACGCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 4823433 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| || || || ||||||||||| || || || || || || | Sbjct 4823434 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTG 4823493 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || || || ||||| || || ||||| ||||| || ||| | || || | Sbjct 4823494 GGATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCAA 4823553 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || |||||||| |||| ||||| ||||| |||||||| Sbjct 4823554 CCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4823602 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| ||||| || | ||| || || || || ||||| || || || |||||| Sbjct 4823148 CCACCCCTCAGACGCAACACAAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGAT 4823207 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || ||||||||||| || || || || || || || Sbjct 4823208 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGG 4823267 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || || || ||||| || || ||||| ||||| || ||| | || || || Sbjct 4823268 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCAACC 4823327 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| |||| ||||| ||||| |||||||| Sbjct 4823328 TCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4823374 >seq3 Length=75876001 Score = 105 bits (116), Expect = 1e-17 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 60139 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGT 60198 |||||| | || ||||||||||||| | | || ||||| || || ||||| || || | Sbjct 66048342 GATAGCTGGTGCTTTATGGTGGTACTTTGTCTCAAAAGGAATTGAGTACTTGGACACAAT 66048401 Query 60199 GTTTTTCATACTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTT 60258 |||||||| | ||||| || ||||| || | ||||| | || || ||||| ||||| Sbjct 66048402 ATTTTTCATCTTGAGGAAGAAATTTAACCAAATCAGTTTCCTTCATGTCTATCACCATTT 66048461 Query 60259 TACTATGTTTACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 |||||||| || || | ||| | || || || ||| || | ||||| |||| Sbjct 66048462 CACTATGTTCACCTTGTGGTGGATTGGTATCAAGTGGGTTCCAGGAGGACAAG 66048514 >seq2 Length=68452538 Score = 89.7 bits (98), Expect = 1e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739 || |||| ||| ||||| ||||| |||||||||||||| || ||||| || || |||||| Sbjct 8820688 ATAAGTCATTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTCACATTT 8820629 Query 82740 TCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTAC 82798 || || |||||| ||| || || || | || || || || || |||| ||||| || Sbjct 8820628 TCTATAGTATCAGAAGGCTCAACCTCAAGGGTGATGGTTTTCCCGGTCAGGGTCTTCAC 8820570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980838501543705