Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq3 114 2e-20 >seq3 Length=75876001 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 58369 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGT 58428 |||||| | || ||||||||||||| | | || ||||| || || ||||| || ||| | Sbjct 66048342 GATAGCTGGTGCTTTATGGTGGTACTTTGTCTCAAAAGGAATTGAGTACTTGGACACAAT 66048401 Query 58429 GTTTTTCATACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTT 58488 |||||||| | ||||| || ||||| || | || || || || || ||||| ||||| Sbjct 66048402 ATTTTTCATCTTGAGGAAGAAATTTAACCAAATCAGTTTCCTTCATGTCTATCACCATTT 66048461 Query 58489 TACTATGTTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 |||||||| || || | ||| | ||||| || ||| || ||||||| || Sbjct 66048462 CACTATGTTCACCTTGTGGTGGATTGGTATCAAGTGGGTTCCAGGAGGACA 66048512 Score = 89.7 bits (98), Expect = 9e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 58541 GCATTTTTCGGCGCTCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATTATGGT 58600 || ||||| || || || ||||||||||||| |||||| ||||||| | || ||||| Sbjct 66054388 GCTTTTTTTGGAGCCCAAATGAATTCTTTTATTCATGTTGTTATGTACATGTACTATGGA 66054447 Query 58601 ATGGCGGCGTGTGGACATATGTTTAAAAAGTATTTATGGTGGAAGCGTTACCTTACTATA 58660 | || || ||||| | || ||| | || ||| | |||||||| || ||| | || ||| Sbjct 66054448 TTAGCTGCCTGTGGCCCTAAATTTCAGAAATATCTGTGGTGGAAACGATACTTGACCATA 66054507 Query 58661 ATGCAATTGGTA 58672 | ||||||||| Sbjct 66054508 TTACAATTGGTA 66054519 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 58673 CAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGCCCGTTTCCA 58732 || ||||| | || | || || || || ||||| ||||| || || || || || || Sbjct 66056703 CAGTTCCACGTGACTCTTGGCCACACAGCCATGTCTATTTATATCGACTGTCCCTTCCCT 66056762 Query 58733 AAATGGACGCAATGGTCAGTTATCATCTATTCTATTACTTTTATATTATTGTTTGGTAAC 58792 ||||||| ||| ||| || || |||||| | || || ||||| || |||||||||||| Sbjct 66056763 AAATGGATGCACTGGGGTGTAATGATCTATGCCATCACCTTTATTTTCTTGTTTGGTAAC 66056822 Query 58793 TTCTATTTTAGAACATACAA 58812 ||||| | | | ||||| || Sbjct 66056823 TTCTACTATCGGACATATAA 66056842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902523654959200