Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq30 210 3e-49 seq78581 154 2e-32 seq78569 143 3e-29 >seq30 Length=9398747 Score = 210 bits (232), Expect = 3e-49 Identities = 582/881 (66%), Gaps = 15/881 (2%) Strand=Plus/Plus Query 162120 ATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGA 162179 ||| |||||||| || || ||||| || |||| || ||||| || | || ||| Sbjct 5819492 ATCAAACTTGTTGGCAAATAGGTGGTGT---TTCTGTAACATCCAGTTCAAGTCTCCCAC 5819548 Query 162180 TCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATC 162239 || ||||| ||||| || ||||| || | || ||||||| ||||| |||| || | Sbjct 5819549 ACCAAACACACACACAGAGCGCACATGAATTCCATTGCACGGAGGATAGGGGGCACCTTT 5819608 Query 162240 GTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGA 162299 |||||||| || | || |||||||| || ||||| | | ||| | |||||| || Sbjct 5819609 TGAAACATCCCCTTCAAAATAATGCCACTTCACAAACCTGGCAAGAGCATTCATGTCAGA 5819668 Query 162300 GGTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 || ||||||| |||| || | || || || || || | || | ||| || | || Sbjct 5819669 AACATCATACTTGT-CACTAGAAGAAACTGCCCCTGGGACTTCAGGGATTCTTTGAATAG 5819727 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 ||||||||| || ||| || || ||||| || || || | ||| || || || || || Sbjct 5819728 TAGCCCACAAGTATTCATCAGGGCTATAAGTGTCTTTAGCCCATTCAATAAATTCAAGGA 5819787 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 | | | || ||| | || || | ||| | ||| ||| || || || | Sbjct 5819788 TTTTGCTGTTGTCTAGCACATACTCTACAAAACTCCTACTAGCAACAAAATAGGCACTGC 5819847 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 |||| || || ||| | | | ||| || || | ||||||| ||| |||| || | Sbjct 5819848 CAGAGAAAACAGGTGTACTAAGAGGTGGAGGTTGTTTGTCTATTCCCATGTTCTTTAGCT 5819907 Query 162539 TTCCCTCTACGACCACGT-GTCTCTTCCTCCACCTGGCCATC-TTACTGGTAGACGGGTG 162596 | || || || | | | || | || |||| | | || || |||| || | | Sbjct 5819908 TACCATCAACAATTTCATAGTGT-TTTTTCCATC-GTATTTCTTTGCTGGAAGGCATTTT 5819965 Query 162597 TTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATT 162656 || || |||| ||||| |||| | ||| |||| | |||||| || | || Sbjct 5819966 CTCAGTTTCTAAGCTGTTTTCACCCTTTAGGGCTTTCAATTTCTCCACCATTTCCTGGTT 5820025 Query 162657 GGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAG 162716 |||||||| |||||||| | || || ||||| || | ||||||||| || || Sbjct 5820026 GGTCTTAATAGGAAAGTCCATACCACAAAGATTTATCAAATATTTCCAGTTTGTACTTCT 5820085 Query 162717 TCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACAC 162776 | ||| ||||| | | ||||| || || ||||| || | |||||||| || ||||| Sbjct 5820086 CCTGTAGAGATCTTTCATGCAGTTGAGGTCTGCCTGTACCCTGCTCCACGAAGCATACAC 5820145 Query 162777 GACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCAC 162836 || |||||||| |||| | ||||||||| | |||||| || || || ||| | || Sbjct 5820146 TACACTCTCCAATTGGCTGGCAATAAAGACATTATTGAAACAGGACACAATTCCCTTAAC 5820205 Query 162837 GGCCAGTGAGAACA---TCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTG 162893 | | | |||| | || || | || | || || || | |||||| |||||| Sbjct 5820206 TG-CTGCCAGAAAAGATTCTGG--AGACTTTTTGTCAACATGAATGCAGTAATAATTCTG 5820262 Query 162894 AGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGAT 162953 ||| || ||||| | || || | ||| || | ||| ||||| || || | |||||| || Sbjct 5820263 AGGAGCATAGATTGATCTTAGAAGTCTATCAAGCATGTCTATTTTGTGATATACCACTAT 5820322 Query 162954 AGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 ||||| || || || || |||| || || |||||||| Sbjct 5820323 TGAATAGGCAATTGGAAATCCAGCTTCTTCTTTACTGAGAG 5820363 >seq78581 Length=17267600 Score = 154 bits (170), Expect = 2e-32 Identities = 402/599 (67%), Gaps = 23/599 (4%) Strand=Plus/Minus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 || || ||| | ||||| | | || | ||| |||||||||| ||| | || | ||| Sbjct 2899086 GCTAGCTCTCTTGGGGAGAGGAAATCTTCCACATGAATGAAAGAATCTGCTGGAATATAA 2899027 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || || || || ||||| |||| || | ||| | ||||| | || |||| ||||| Sbjct 2899026 TTCTCATAGTTTTCTCTGGATGGGCCCAATACAACTGGTACAGATCCAGCCAGAAGAGCA 2898967 Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125 ||| |||||||| ||||| || || |||| | ||||| ||||| | ||||| ||| Sbjct 2898966 TTGTAAAGTTTTTCAGTAATGTAATCTTTGTGGATTGAGTTTTCAAAGGACAGATAAAAT 2898907 Query 177126 TTACAGGA--AGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGT 177183 ||||| | ||||||| | | || |||| | ||| | ||| ||||| | | | | Sbjct 2898906 TTACAAGTGGAGATAGTTG--GAATCAAGTTTTTATCATTCACATAGTCTCCAAATGCTT 2898849 Query 177184 TCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACG 177242 ||| || ||| || || | | ||| || ||||| || || || || || | Sbjct 2898848 GCCCATAGGTATGGATTTCAGTATATTTGCTTAGCTCATTATAATA-CTTGACTCGAGCA 2898790 Query 177243 TGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCGGGAACGGGA 177302 || ||| |||||| || || || ||||| || || ||||| |||||||| ||| | Sbjct 2898789 TGCTCGGGGTTCCAGTTACTTACAACCCAACATACCAACTT-CTCTTTGCT----CGGCA 2898735 Query 177303 TTCGATACTAATGCA--GTGTCTC-TG--AGCGTTAGTGAT-CCATAGGGCACGTGAATA 177356 | | |||||| | | ||| || | | || ||| ||||| ||||| |||||| Sbjct 2898734 CTTCA----AATGCAAAGGGGCTCGTGCTAACCTTCATGAAGCCATAAGGCACTTGAATA 2898679 Query 177357 TCCGAGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACCT-TGTTTGAA 177415 || || || || | || || | || || ||||| |||| ||| || || | ||| Sbjct 2898678 TCTGAATCACGCCGATAAGTCAGGGTCAGGTTGAACAGGTGTTCAATGCCACTCTTTTGC 2898619 Query 177416 GGGGCTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGG 177475 || | ||| | | || || || ||||||||||| |||||||| || || | ||| || | Sbjct 2898618 GGAG-TGTGAGTTGGAGACTCCAAGTTCATCCAAATCCACTTCTGGAATGGTGGCCTAGC 2898560 Query 177476 TTCCGTAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCAT 177534 || | ||||| | || |||| || || ||||||||||||| | ||||||| Sbjct 2898559 TTGCTGAGGTAAATTAGTGAGATCCCAGCTGATGTCTCTGTGGTGAATAAGGACGGCAT 2898501 >seq78569 Length=9971662 Score = 143 bits (158), Expect = 3e-29 Identities = 183/250 (73%), Gaps = 4/250 (2%) Strand=Plus/Minus Query 162736 CAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTG 162795 |||||||| || || ||||| || ||| || |||||||| || ||||||| ||||| Sbjct 6849036 CAGTTCAGGTCCGCTTGGACCCGGGACCAGGATGCGTACACTACTCTCTCCAGTTTAGTG 6848977 Query 162796 GCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAGAA--CATCG 162853 || ||||||||||| ||||| || || | ||||| || ||| ||| | || Sbjct 6848976 GCCACAAAGACATTTTCGAAGCAGGAGGCGATCCCTCGGACTGCCTCCTTGAATTCGTCC 6848917 Query 162854 GGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCA 162913 || | |||| ||||||||| || ||||||| |||||| || | |||||||| ||| | Sbjct 6848916 GGG--GATTTCAGATCTACGTGGACACAGTATATATTCTGGGGCGTGTAGATGGACCTTA 6848859 Query 162914 GTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACT 162973 ||||| ||||||||||| ||||| | || || || || ||||| || || || || | Sbjct 6848858 ACAATCTTTCGAACATCTCAATCTTCTCATGCACTACCATGGAATATGCAATAGGAAAAT 6848799 Query 162974 CAGCCTCCTC 162983 | ||||||| Sbjct 6848798 CTTCCTCCTC 6848789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577863726712000