Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03-
31] 78,595 sequences; 2,365,766,571 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq78565 131 1e-25
seq39 87.8 1e-12
>seq78565
Length=14964121
Score = 131 bits (144), Expect = 1e-25
Identities = 157/211 (74%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600
||||| || |||||| ||||| || |||||||| ||||| || ||||| | || |||
Sbjct 6184415 ACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 6184356
Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660
| || ||||||||||| |||| | |||||| ||| | || | |||||||||||
Sbjct 6184355 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGG 6184296
Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719
||||| | || |||| || | ||||||||| | || || || | ||||| |||||
Sbjct 6184295 ATTTT-GGCTTTGACATTCTCAATGGTGTCGCTGGGCTCTACCTCTAGGGTGATGGTTTT 6184237
Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
|| || || ||||| |||||||||||||||
Sbjct 6184236 GCCCGTCAAGGTTTTCACAAAGATCTGCATA 6184206
Score = 129 bits (142), Expect = 4e-25
Identities = 168/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||||| | || | ||||| || |||||| ||||| || |||||||| |||||
Sbjct 6184206 ACCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGA 6184147
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| ||||| | || |||| || ||||||||||| |||| | |||||| ||| | ||
Sbjct 6184146 CAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGG 6184087
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||||||||||| ||||| | | |||| || | ||||||||| | || |
Sbjct 6184086 AATGCCTTCTTTGTCCTGGATTTT-GGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTA 6184028
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || | ||||| ||||| || || || ||||| |||||||||||||||
Sbjct 6184027 CTTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATA 6183978
Score = 127 bits (140), Expect = 1e-24
Identities = 167/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||||| | || | ||||| || |||||| ||||| || |||||||| |||||
Sbjct 6183978 ACCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGA 6183919
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| ||||| | || |||| || ||||||||||| |||| | |||||| ||| | ||
Sbjct 6183918 CAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGG 6183859
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||||||||||| ||||| | | |||| || | ||||||||| | || |
Sbjct 6183858 AATGCCTTCTTTGTCTTGGATTTT-GGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTA 6183800
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || | ||||| ||||| || || || ||||| ||||||||||||||
Sbjct 6183799 CTTCCAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6183751
>seq39
Length=8077485
Score = 87.8 bits (96), Expect = 1e-12
Identities = 162/234 (69%), Gaps = 3/234 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
||||||||||| ||| | ||| | || || ||| ||| || || |||||||| || ||
Sbjct 4823375 ACCACCTCTCAGACGCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 4823434
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| ||||| | || |||| || || || ||||| |||| | |||||| || | ||
Sbjct 4823435 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGG 4823494
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||||||||||| || || | | |||| || | ||||| || | || |
Sbjct 4823495 GATGCCTTCTTTGTCCTGGATCTT-AGCCTTGACATTCTCAATAGTGTCACTGGGCTCAA 4823553
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754
| || | ||||| || || || || | || || |||||||||||||| ||||
Sbjct 4823554 CCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT-GTTG 4823606
Score = 86.0 bits (94), Expect = 4e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| |||| ||| ||||| | || || ||| ||| || || |||||||| || ||
Sbjct 4823148 CCACCCCTCAGACGCAACACAAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGAT 4823207
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||||| | || |||| || || || ||||| |||| | |||||| || | ||
Sbjct 4823208 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGG 4823267
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||||||||| || || | | |||| || | ||||| || | || ||
Sbjct 4823268 ATGCCTTCTTTGTCCTGGATCTT-AGCCTTGACATTCTCAATAGTGTCACTGGGCTCAAC 4823326
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
|| | ||||| || || || || | || || |||||||||||||||
Sbjct 4823327 CTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATA 4823375
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328389142142400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |