Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq78565 104 6e-17 >seq78565 Length=14964121 Score = 104 bits (114), Expect = 6e-17 Identities = 160/228 (70%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| ||||| | || || ||||| ||||| ||||||| || Sbjct 6183748 AAAATG---CAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTGGAAGTAGAG 6183804 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 ||||| | || || ||| || || ||||| |||||||| ||| || Sbjct 6183805 CCCAGCGACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCA 6183864 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 ||| || || || ||||| |||||||||||| |||||||||| | || || |||| Sbjct 6183865 GACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGAC 6183924 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||| |||||||||| || ||||| ||| | || || | || ||| Sbjct 6183925 TACAACATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGA 6183972 Score = 100 bits (110), Expect = 7e-16 Identities = 110/145 (76%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGC 206306 ||||| ||| || ||||| |||||||| ||| || ||| || || || ||||| || Sbjct 6184285 AAAGCCAAA-ATCCAAGACAAAGAAGGCATTCCTCCAGACCAGCAGAGGCTGATCTTTGC 6184343 Query 206307 CGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 |||||||||| |||||||||| | || || |||| |||||| |||||||||| || || Sbjct 6184344 CGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACATCCAGAAAGAATCCAC 6184403 Query 206367 TCTTCACCTTGTTTTGAGACTTCGA 206391 ||| ||| | || || | || ||| Sbjct 6184404 TCTGCACTTGGTCCTGCGCCTCCGA 6184428 Score = 93.3 bits (102), Expect = 1e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| | || || ||||| ||||| | ||||| || ||| Sbjct 6183982 CAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGCGAC 6184041 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || || || || |||||||| ||| || ||| || Sbjct 6184042 ACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGACCAGCAG 6184101 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| |||||||||||| |||||||||| | || || |||| |||||| || Sbjct 6184102 AGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACATC 6184161 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||||| || ||||| ||| | || || | || ||| Sbjct 6184162 CAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGA 6184200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180630708300995