Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03-
31] 78,595 sequences; 2,365,766,571 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq78565 105 6e-18
seq140 100 3e-16
>seq78565
Length=14964121
Score = 105 bits (116), Expect = 6e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967
||||| ||||| || | | || ||||| || |||||||||||| || ||| |||
Sbjct 6183966 GCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCC 6183907
Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027
|||||| ||||| || |||| | |||| || | ||| || |||||||| |||||||||||
Sbjct 6183906 ATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTT 6183847
Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087
|| ||||| || | | || | || ||| | ||||| ||||| | || |
Sbjct 6183846 GTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCCAGGGTGAT 6183787
Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||| || |||| ||||| | || ||||||||
Sbjct 6183786 GGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6183751
Score = 105 bits (116), Expect = 6e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967
||||| ||||| || | | || ||||| || |||||||||||| || ||| |||
Sbjct 6184194 GCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCC 6184135
Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027
|||||| ||||| || |||| | |||| || | ||| || |||||||| |||||||||||
Sbjct 6184134 ATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTT 6184075
Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087
|| ||||| || | | || | || ||| | ||||| ||||| | || |
Sbjct 6184074 GTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGAT 6184015
Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||| || |||| ||||| | || ||||||||
Sbjct 6184014 GGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6183979
Score = 105 bits (116), Expect = 6e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967
||||| ||||| || | | || ||||| || |||||||||||| || ||| |||
Sbjct 6184422 GCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCC 6184363
Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027
|||||| ||||| || |||| | |||| || | ||| || |||||||| |||||||||||
Sbjct 6184362 ATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTT 6184303
Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087
|| ||||| ||| | | || | || ||| | ||||| || || | || |
Sbjct 6184302 GTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCGCTGGGCTCTACCTCTAGGGTGAT 6184243
Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||| || |||| ||||| | || ||||||||
Sbjct 6184242 GGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6184207
>seq140
Length=3053534
Score = 100 bits (110), Expect = 3e-16
Identities = 90/113 (80%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562
|||||| ||| ||||| | ||||||||||||||| || ||| ||||| || ||||| |
Sbjct 15624 TGTACTCCACTATTTCTGTGCACAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGGT 15683
Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCG 147615
||||||||| ||| || | ||| ||| | |||||||| ||| |||||||||
Sbjct 15684 TGCTTTTCCTATTACAAGAGTCCTTGTACAGCATGTAAGGTGTCCCGGTCTCG 15736
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476142959284200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |