Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq1284 113 1e-21 seq523 113 1e-21 seq397 113 1e-21 seq29684 107 6e-20 seq437 104 7e-19 seq314 104 7e-19 seq29 100 9e-18 seq78565 98.7 3e-17 seq78541 98.7 3e-17 seq707 98.7 3e-17 seq4 98.7 3e-17 seq1230 96.9 1e-16 seq179 93.3 1e-15 seq1591 89.7 2e-14 seq952 87.8 6e-14 seq518 86.0 2e-13 seq844 82.4 2e-12 seq488 82.4 2e-12 seq2906 80.6 8e-12 seq1089 80.6 8e-12 seq26 78.8 3e-11 >seq1284 Length=56295 Score = 113 bits (124), Expect = 1e-21 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 24032 GCTGAAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 23973 Query 2829 CCGGGCTTCAGC 2840 || ||||| ||| Sbjct 23972 CCAGGCTTTAGC 23961 >seq523 Length=313168 Score = 113 bits (124), Expect = 1e-21 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| | Sbjct 86004 GCTGAAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCTCTGGTTCAATC 86063 Query 2829 CCGGGCTTCAGC 2840 | |||||||||| Sbjct 86064 CTGGGCTTCAGC 86075 Score = 87.8 bits (96), Expect = 6e-14 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||||||||||| | |||| ||| |||||||||||||||| || |||||||||||| | Sbjct 3122 GCTGAAGTAGCTCACTCGGGAAAGCGTTAGACTGAAGATCTAGAGATCCCTGGTTCAATC 3063 Query 2829 CCGGGCTT 2836 || ||||| Sbjct 3062 CCAGGCTT 3055 Score = 80.6 bits (88), Expect = 8e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||| |||||||||| ||||||||||||||||||| ||||| |||||||| || ||| | Sbjct 73077 AAGTAACTCAGTTGGGTGAGCATTAGACTGAAGATCCAAAGGGCCCTGGTTTAATCCCAG 73018 Query 2833 GCTT 2836 ||| Sbjct 73017 CCTT 73014 >seq397 Length=505659 Score = 113 bits (124), Expect = 1e-21 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| | Sbjct 409553 GCTGAAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCTCTGGTTCAATC 409494 Query 2829 CCGGGCTTCAGC 2840 |||| ||||||| Sbjct 409493 CCGGACTTCAGC 409482 Score = 109 bits (120), Expect = 2e-20 Identities = 65/68 (96%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 428379 GCCGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTGAAGGTCCCTGGTTCAATC 428438 Query 2829 CCGGGCTT 2836 |||||||| Sbjct 428439 CCGGGCTT 428446 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||| |||||| ||||||| ||||||||||||||||||| |||||||||||| | Sbjct 72237 GCTGAAGTATCTCAGTGGGGAGAGTGTTAGACTGAAGATCTAAAGATCCCTGGTTCAATC 72296 Query 2829 CCGGGCTTCAGC 2840 || ||||||||| Sbjct 72297 CCAGGCTTCAGC 72308 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 ||||||||||||||||||||||||| ||||| |||||| ||| ||| |||||||||| Sbjct 191692 GCTGAAGTAGCTCAGTTGGGAGAGCGTTAGAGTGAAGAACTAGAGGGCCCTGGTTCA 191748 >seq29684 Length=973 Score = 107 bits (118), Expect = 6e-20 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 181 GCTGAAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 240 Query 2829 CCGGGCTTCAGC 2840 | ||||| ||| Sbjct 241 CAAGGCTTTAGC 252 >seq437 Length=501603 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| || | Sbjct 136698 GCTGAAGTAGCTCAGTTGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTTAATC 136639 Query 2829 CCGGGCTTCAGC 2840 || || |||||| Sbjct 136638 CCAGGGTTCAGC 136627 >seq314 Length=846355 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||| | Sbjct 144338 GCTGAAGTAGCTCAGTTGGGCAAGCATTAGACTGAAGCTCTAAATGTCCCTGGTTCAATC 144397 Query 2829 CCGGGCTTCAGC 2840 || ||||||||| Sbjct 144398 CCAGGCTTCAGC 144409 Score = 93.3 bits (102), Expect = 1e-15 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 2771 TGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCC 2830 ||||||| |||||| ||||||||||||||||||| ||||| ||||||||||||||| ||| Sbjct 698386 TGAAGTAACTCAGTCGGGAGAGCATTAGACTGAAAATCTAGAGGTCCCTGGTTCAATCCC 698445 Query 2831 GGGCTT 2836 ||||| Sbjct 698446 AGGCTT 698451 Score = 87.8 bits (96), Expect = 6e-14 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||||||||||||| ||| || ||||||||||||||||| ||||||||||||||| | Sbjct 13069 GCTGAAGTAGCTCAGTCAGGAAAGTATTAGACTGAAGATCTAGAGGTCCCTGGTTCAATC 13128 Query 2829 CCGGGCTT 2836 || || || Sbjct 13129 CCAGGTTT 13136 Score = 82.4 bits (90), Expect = 2e-12 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||||||||||| |||||||||||||| ||||| || | ||||||||| | Sbjct 582940 GCTGAAGTAGCTCAGTTGGGAAAGCATTAGACTGAAAATCTAGAGATTGCTGGTTCAATC 582881 Query 2829 CCGGGCTT 2836 || |||| Sbjct 582880 CCACGCTT 582873 Score = 78.8 bits (86), Expect = 3e-11 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||||||||||||||| ||||||| || ||||| ||||| |||||| |||||||| | Sbjct 313173 GCTGAAGTAGCTCAGTTGCAAGAGCATAAGCCTGAAAATCTAGAGGTCCATGGTTCAATC 313232 Query 2829 CCGGGCTT 2836 | ||||| Sbjct 313233 TCAGGCTT 313240 Score = 78.8 bits (86), Expect = 3e-11 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| ||||| ||||||| |||| || |||||| ||||||||||||||||||||| | Sbjct 812713 GCTGAAATAGCTGAGTTGGGGGAGCGCTACACTGAAAATCTAAAGGTCCCTGGTTCAATC 812772 Query 2829 CCGGGCTT 2836 || |||| Sbjct 812773 CCAAGCTT 812780 >seq29 Length=9986225 Score = 100 bits (110), Expect = 9e-18 Identities = 63/68 (93%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||| | Sbjct 1964227 GCTGAAGTAGTTCAGTTGGGAAAGCATTAGACTGAAGGTCTAAAGGTCCCTGGTTCAATC 1964168 Query 2829 CCGGGCTT 2836 || ||||| Sbjct 1964167 CCAGGCTT 1964160 >seq78565 Length=14964121 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 6176249 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 6176308 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 6176309 CCGGGTTTCGGC 6176320 >seq78541 Length=8110768 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 6480850 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 6480909 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 6480910 CCGGGTTTCGGC 6480921 >seq707 Length=116737 Score = 98.7 bits (108), Expect = 3e-17 Identities = 60/64 (94%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| | Sbjct 105816 AAGTAGCTCAGTTGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCCCAG 105757 Query 2833 GCTT 2836 |||| Sbjct 105756 GCTT 105753 Score = 96.9 bits (106), Expect = 1e-16 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||| |||||||||||||||||||| ||||||||||||||||||||| |||| ||||| | Sbjct 105609 GCTGTAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTTCCTGCTTCAATC 105550 Query 2829 CCGGGCTT 2836 || ||||| Sbjct 105549 CCAGGCTT 105542 >seq4 Length=49328617 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 29882002 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 29881943 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 29881942 CCGGGTTTCGGC 29881931 >seq1230 Length=46107 Score = 96.9 bits (106), Expect = 1e-16 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||||| |||||||||||||||||||||||||| |||||||||||||||| |||| | Sbjct 42695 GCTGAAGTGACTCAGTTGGGAGAGCATTAGACTGAAAATCTAAAGGTCCCTGGGTCAATC 42636 Query 2829 CCGGGCTTCAG 2839 | |||||| || Sbjct 42635 CTGGGCTTTAG 42625 >seq179 Length=2142867 Score = 93.3 bits (102), Expect = 1e-15 Identities = 63/70 (90%), Gaps = 2/70 (3%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGC--ATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCC 2830 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||| Sbjct 1366252 AAGTAGCTCAGTTGGGAGAGCGCATTAGACTGAAAATCTAAAGGTCCCTGGTTCAATCCC 1366193 Query 2831 GGGCTTCAGC 2840 | ||| ||| Sbjct 1366192 AGACTTTAGC 1366183 >seq1591 Length=33992 Score = 89.7 bits (98), Expect = 2e-14 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||| | Sbjct 12531 GCTGAAGTAGCTCAGTTGGGAGAGTGTTAGACTGAAGATCTAGAGGTCCCTGCTTCAATC 12472 Query 2829 CC 2830 || Sbjct 12471 CC 12470 >seq952 Length=61010 Score = 87.8 bits (96), Expect = 6e-14 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||||||||||||| |||||| |||| |||||||||||| ||||||||| ||||| | Sbjct 19269 GCTGAAGTAGCTCAGTCAGGAGAGGATTATACTGAAGATCTATAGGTCCCTGATTCAATC 19210 Query 2829 CCGGGCTT 2836 || ||||| Sbjct 19209 CCAGGCTT 19202 Score = 86.0 bits (94), Expect = 2e-13 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 2770 CTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCC 2829 ||||||||| ||||||||| ||| ||||||||||||||| ||||||||||||||| || Sbjct 39017 CTGAAGTAGTTCAGTTGGGCGAGTGCTAGACTGAAGATCTACAGGTCCCTGGTTCAATCC 39076 Query 2830 CGGGCTT 2836 |||||| Sbjct 39077 TGGGCTT 39083 >seq518 Length=326142 Score = 86.0 bits (94), Expect = 2e-13 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||||||||||||||||| |||| ||||||||||||||| ||||| ||||||||| | Sbjct 59366 GCTGAAGTAGCTCAGTTGGGGGAGCGTTAGACTGAAGATCTGGAGGTCACTGGTTCAATC 59425 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| Sbjct 59426 TTAGGCTTTAGC 59437 >seq844 Length=81815 Score = 82.4 bits (90), Expect = 2e-12 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||| |||||||||||| ||||| ||||||||| ||||||||||||||| ||| Sbjct 31813 AAGTAGCTTAGTTGGGAGAGCGTTAGATCGAAGATCTAGAGGTCCCTGGTTCAATCCCAA 31754 Query 2833 GCTTCAGC 2840 |||| ||| Sbjct 31753 GCTTTAGC 31746 >seq488 Length=443413 Score = 82.4 bits (90), Expect = 2e-12 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||||||||||||||||||||| |||||||||| |||| || ||||||||| || | Sbjct 169739 GCTGAAGTAGCTCAGTTGGGAGAGTGTTAGACTGAAAATCTGGAGATCCCTGGTTTAATC 169798 Query 2829 CCGGGCTT 2836 || ||||| Sbjct 169799 CCAGGCTT 169806 >seq2906 Length=9912 Score = 80.6 bits (88), Expect = 8e-12 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 2770 CTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCC 2829 ||||||||||||||| ||||||| ||||||||| || || ||||||||||||||| || Sbjct 1620 CTGAAGTAGCTCAGTCAGGAGAGCGTTAGACTGAGAATTTAGAGGTCCCTGGTTCAAACC 1679 Query 2830 CGGGCTT 2836 | ||||| Sbjct 1680 CAGGCTT 1686 >seq1089 Length=52042 Score = 80.6 bits (88), Expect = 8e-12 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 2770 CTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCC 2829 ||||||||| ||||||||| ||| ||||||||||||||| |||||||| |||||| || Sbjct 31934 CTGAAGTAGTTCAGTTGGGCGAGTGCTAGACTGAAGATCTACAGGTCCCTTGTTCAATCC 31993 Query 2830 CGGGCTT 2836 | ||||| Sbjct 31994 CAGGCTT 32000 >seq26 Length=11608308 Score = 78.8 bits (86), Expect = 3e-11 Identities = 49/53 (92%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGG 2821 ||||||||||||||| ||||| |||||||||| |||||||| ||||||||||| Sbjct 3636674 GCTGAAGTAGCTCAGCTGGGACAGCATTAGACAGAAGATCTGAAGGTCCCTGG 3636622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15835975163775