Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq599 174 2e-37 seq158 125 1e-22 seq295 123 4e-22 seq213 113 6e-19 >seq599 Length=184155 Score = 174 bits (192), Expect = 2e-37 Identities = 178/231 (77%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| |||||| |||| |||| || |||| ||| Sbjct 36294 TCTACAAGGTGCTGAAGCAGGTTCACCCCGACACCGG-----CATC-TCTTCCAAGGCCA 36241 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||| ||||| |||| ||||||| ||||| || Sbjct 36240 TGGGCATCATGAACTCCTTCGTCAATGACATCTTCGAGCGCATCGCTGGGGAGGCGTCTC 36181 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||||| | |||||||||| ||| ||| | | || ||||||||||||||||||| Sbjct 36180 GCCTGGCGCATTACAACAAGCGCTCCACCATCACCTCCCGGGAGATCCAGACCGCCGTGC 36121 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| ||| || ||||||| |||||||| ||||||||||||| Sbjct 36120 GCCTGCTGCTGCCCGGGGAGCTGGCCAAACACGCCGTGTCCGAGGGCACCA 36070 Score = 174 bits (192), Expect = 2e-37 Identities = 178/231 (77%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| |||||| |||| |||| || |||| ||| Sbjct 43142 TCTACAAGGTGCTGAAGCAGGTTCACCCCGACACCGG-----CATC-TCTTCCAAGGCCA 43089 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||| ||||| |||| ||||||| ||||| || Sbjct 43088 TGGGCATCATGAACTCCTTCGTCAATGACATCTTCGAGCGCATCGCTGGGGAGGCGTCTC 43029 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||||| | |||||||||| ||| ||| | | || ||||||||||||||||||| Sbjct 43028 GCCTGGCGCATTACAACAAGCGCTCCACCATCACCTCCCGGGAGATCCAGACCGCCGTGC 42969 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| ||| || ||||||| |||||||| ||||||||||||| Sbjct 42968 GCCTGCTGCTGCCCGGGGAGCTGGCCAAACACGCCGTGTCCGAGGGCACCA 42918 Score = 174 bits (192), Expect = 2e-37 Identities = 178/231 (77%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| |||||| |||| |||| || |||| ||| Sbjct 74436 TCTACAAGGTGCTGAAGCAGGTTCACCCCGACACCGG-----CATC-TCTTCCAAGGCCA 74489 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||| ||||| |||| ||||||| ||||| || Sbjct 74490 TGGGCATCATGAACTCCTTCGTCAATGACATCTTCGAGCGCATCGCTGGGGAGGCGTCTC 74549 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||||| | |||||||||| ||| ||| | | || ||||||||||||||||||| Sbjct 74550 GCCTGGCGCATTACAACAAGCGCTCCACCATCACCTCCCGGGAGATCCAGACCGCCGTGC 74609 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| ||| || ||||||| |||||||| ||||||||||||| Sbjct 74610 GCCTGCTGCTGCCCGGGGAGCTGGCCAAACACGCCGTGTCCGAGGGCACCA 74660 Score = 170 bits (188), Expect = 3e-36 Identities = 177/231 (77%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| |||||| |||| |||| || |||| ||| Sbjct 86898 TCTACAAGGTGCTGAAGCAGGTTCACCCCGACACCGG-----CATC-TCTTCCAAGGCCA 86951 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||| ||||| |||| ||||||| ||||| || Sbjct 86952 TGGGCATCATGAACTCCTTCGTCAATGACATCTTCGAGCGCATCGCTGGGGAGGCGTCTC 87011 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||||| | ||||||||| ||| ||| | | || ||||||||||||||||||| Sbjct 87012 GCCTGGCGCATTATAACAAGCGCTCCACCATCACCTCCCGGGAGATCCAGACCGCCGTGC 87071 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| ||| || ||||||| |||||||| ||||||||||||| Sbjct 87072 GCCTGCTGCTGCCCGGGGAGCTGGCCAAACACGCCGTGTCCGAGGGCACCA 87122 >seq158 Length=2496286 Score = 125 bits (138), Expect = 1e-22 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| || ||| |||| |||| || ||| ||| Sbjct 81508 TCTACAAGGTGCTGAAGCAGGTTCATCCCGACACCGG-----CATC-TCTTCTAAGGCCA 81561 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| |||||||| ||||| | || |||| | ||||| || Sbjct 81562 TGGGCATCATGAACTCCTTTGTCAATGACATCTTTGAGTGCATTGCTGGGGAGGCATCTC 81621 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 | |||||| | ||||||||| ||| ||| | | | ||||||||||||||||||| Sbjct 81622 ACTTGGCGCATTATAACAAGCGCTCCACCATCACCTCCCAAGAGATCCAGACCGCCGTGC 81681 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| ||| || ||||||| ||||| | || |||||||||| Sbjct 81682 GCCTGCTGCTGCCCGGGGAGCTGGCCAAAGACGCCATGTCGGAGGGCACCA 81732 >seq295 Length=932878 Score = 123 bits (136), Expect = 4e-22 Identities = 134/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| ||||| ||||||||||| ||||| || || | | || ||||| | ||| ||| Sbjct 123561 AAGGCCATGAGCATCATGAACTCCTTTGTGAATGATGTCTTTGAGCGCATTGCCACAGAG 123620 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 ||| ||||| || | | |||||||||| ||| ||| || |||||| | |||||| Sbjct 123621 GCCTCGCGCCTAGCACAATACAACAAGCGCTCCACCATCACCAGCCGCGAGGTGCAGACC 123680 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| |||||| | ||| || || ||||||| ||||||||| || |||||||||| Sbjct 123681 GCCGTCCGCCTGCTGCTGCCGGGGGAGCTGGCCAAGCACGCCGTGTCTGAGGGCACCA 123738 >seq213 Length=1662576 Score = 113 bits (124), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| ||||| || || || ||||| |||| | ||| ||| ||| ||||| Sbjct 1439596 TACAAAGTGCTGAAACAAGTTCACCCGGACACCGGT-----ATC-TCCTCTAAGGCCATG 1439543 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||| ||||| |||||||| |||| ||||| | || || |||| Sbjct 1439542 GGGATCATGAACTCCTTTGTGAACGACATCTTCGAGCGCATTGCGGGGGAAGCGTCTCGC 1439483 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | | ||||||||| || ||| | || |||||||||||||| |||||| Sbjct 1439482 CTGGCTCATTACAACAAGCGATCAACCATCACTTCCCGGGAGATCCAGACCGCTGTGCGC 1439423 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| || || ||||||| || || || || |||||||||| Sbjct 1439422 CTGCTTCTGCCGGGGGAGCTGGCCAAACATGCTGTGTCTGAGGGCACCA 1439374 Score = 111 bits (122), Expect = 2e-18 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 ||||| |||||||||||| ||||| |||||||| |||| || |||| || || Sbjct 1648007 CCATGGGGATCATGAACTCCTTTGTAAACGACATCTTCGAACGTATCGCTGGGGAAGCGT 1648066 Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 ||||||||| | | |||||||||| || ||| | || |||||||||||||| | Sbjct 1648067 CTCGCCTGGCTCATTACAACAAGCGCTCAACCATCACTTCTCGGGAGATCCAGACCGCTG 1648126 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||||| | ||| || || ||||||| || || || || |||||||||| Sbjct 1648127 TGCGCCTGCTTTTGCCGGGGGAGCTGGCCAAACATGCGGTGTCTGAGGGCACCA 1648180 Score = 107 bits (118), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| ||||| || || || ||||| |||| | ||| ||| ||| ||||| Sbjct 1385004 TACAAAGTGCTGAAACAAGTTCACCCGGACACCGGT-----ATC-TCCTCTAAGGCCATG 1385057 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||| ||||| |||||||| |||| ||||| | || || |||| Sbjct 1385058 GGGATCATGAACTCCTTTGTGAACGACATCTTCGAGCGCATTGCGGGGGAAGCGTCTCGC 1385117 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | | ||||||||| || ||| | || |||||||||||||| |||||| Sbjct 1385118 CTGGCTCATTACAACAAGCGTTCAACTATCACTTCCCGGGAGATCCAGACCGCTGTGCGC 1385177 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| || || ||||| | || || || || |||||||||| Sbjct 1385178 CTGCTTCTGCCGGGGGAGCTGGCGAAACATGCTGTGTCTGAGGGCACCA 1385226 Score = 93.3 bits (102), Expect = 6e-13 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| ||||| ||||||||||| ||||| |||||||| |||| || |||| ||| Sbjct 1612284 AAGGCCATGGGCATCATGAACTCCTTTGTGAACGACATCTTCGAGCGTATCGCAGGGGAG 1612225 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 || ||| ||||||| | |||||||||| || ||| | || ||||| |||||| Sbjct 1612224 GCGTCTCGTCTGGCGCATTACAACAAGCGCTCGACTATCACTTCCCGGGAGATTCAGACC 1612165 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || | ||| | ||| ||||| | |||| ||||| || || |||||||| Sbjct 1612164 GCTGTAAGACTGCTGCTGCCGGGCGAGTTAGCCAAACACGCGGTGTCTGAGGGCAC 1612109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7170230567792390