Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03-
31] 78,595 sequences; 2,365,766,571 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq599 174 2e-37
seq158 125 1e-22
seq295 123 4e-22
seq213 113 6e-19
>seq599
Length=184155
Score = 174 bits (192), Expect = 2e-37
Identities = 178/231 (77%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971
||||||||||||| |||||||| |||||| |||| |||| || |||| |||
Sbjct 36294 TCTACAAGGTGCTGAAGCAGGTTCACCCCGACACCGG-----CATC-TCTTCCAAGGCCA 36241
Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031
|| ||||||||||| || ||||| ||||| |||| ||||||| ||||| ||
Sbjct 36240 TGGGCATCATGAACTCCTTCGTCAATGACATCTTCGAGCGCATCGCTGGGGAGGCGTCTC 36181
Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091
||||||||| | |||||||||| ||| ||| | | || |||||||||||||||||||
Sbjct 36180 GCCTGGCGCATTACAACAAGCGCTCCACCATCACCTCCCGGGAGATCCAGACCGCCGTGC 36121
Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||||| | ||| ||| || ||||||| |||||||| |||||||||||||
Sbjct 36120 GCCTGCTGCTGCCCGGGGAGCTGGCCAAACACGCCGTGTCCGAGGGCACCA 36070
Score = 174 bits (192), Expect = 2e-37
Identities = 178/231 (77%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971
||||||||||||| |||||||| |||||| |||| |||| || |||| |||
Sbjct 43142 TCTACAAGGTGCTGAAGCAGGTTCACCCCGACACCGG-----CATC-TCTTCCAAGGCCA 43089
Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031
|| ||||||||||| || ||||| ||||| |||| ||||||| ||||| ||
Sbjct 43088 TGGGCATCATGAACTCCTTCGTCAATGACATCTTCGAGCGCATCGCTGGGGAGGCGTCTC 43029
Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091
||||||||| | |||||||||| ||| ||| | | || |||||||||||||||||||
Sbjct 43028 GCCTGGCGCATTACAACAAGCGCTCCACCATCACCTCCCGGGAGATCCAGACCGCCGTGC 42969
Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||||| | ||| ||| || ||||||| |||||||| |||||||||||||
Sbjct 42968 GCCTGCTGCTGCCCGGGGAGCTGGCCAAACACGCCGTGTCCGAGGGCACCA 42918
Score = 174 bits (192), Expect = 2e-37
Identities = 178/231 (77%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971
||||||||||||| |||||||| |||||| |||| |||| || |||| |||
Sbjct 74436 TCTACAAGGTGCTGAAGCAGGTTCACCCCGACACCGG-----CATC-TCTTCCAAGGCCA 74489
Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031
|| ||||||||||| || ||||| ||||| |||| ||||||| ||||| ||
Sbjct 74490 TGGGCATCATGAACTCCTTCGTCAATGACATCTTCGAGCGCATCGCTGGGGAGGCGTCTC 74549
Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091
||||||||| | |||||||||| ||| ||| | | || |||||||||||||||||||
Sbjct 74550 GCCTGGCGCATTACAACAAGCGCTCCACCATCACCTCCCGGGAGATCCAGACCGCCGTGC 74609
Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||||| | ||| ||| || ||||||| |||||||| |||||||||||||
Sbjct 74610 GCCTGCTGCTGCCCGGGGAGCTGGCCAAACACGCCGTGTCCGAGGGCACCA 74660
Score = 170 bits (188), Expect = 3e-36
Identities = 177/231 (77%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971
||||||||||||| |||||||| |||||| |||| |||| || |||| |||
Sbjct 86898 TCTACAAGGTGCTGAAGCAGGTTCACCCCGACACCGG-----CATC-TCTTCCAAGGCCA 86951
Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031
|| ||||||||||| || ||||| ||||| |||| ||||||| ||||| ||
Sbjct 86952 TGGGCATCATGAACTCCTTCGTCAATGACATCTTCGAGCGCATCGCTGGGGAGGCGTCTC 87011
Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091
||||||||| | ||||||||| ||| ||| | | || |||||||||||||||||||
Sbjct 87012 GCCTGGCGCATTATAACAAGCGCTCCACCATCACCTCCCGGGAGATCCAGACCGCCGTGC 87071
Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||||| | ||| ||| || ||||||| |||||||| |||||||||||||
Sbjct 87072 GCCTGCTGCTGCCCGGGGAGCTGGCCAAACACGCCGTGTCCGAGGGCACCA 87122
>seq158
Length=2496286
Score = 125 bits (138), Expect = 1e-22
Identities = 167/231 (72%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971
||||||||||||| |||||||| || ||| |||| |||| || ||| |||
Sbjct 81508 TCTACAAGGTGCTGAAGCAGGTTCATCCCGACACCGG-----CATC-TCTTCTAAGGCCA 81561
Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031
|| ||||||||||| |||||||| ||||| | || |||| | ||||| ||
Sbjct 81562 TGGGCATCATGAACTCCTTTGTCAATGACATCTTTGAGTGCATTGCTGGGGAGGCATCTC 81621
Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091
| |||||| | ||||||||| ||| ||| | | | |||||||||||||||||||
Sbjct 81622 ACTTGGCGCATTATAACAAGCGCTCCACCATCACCTCCCAAGAGATCCAGACCGCCGTGC 81681
Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||||| | ||| ||| || ||||||| ||||| | || ||||||||||
Sbjct 81682 GCCTGCTGCTGCCCGGGGAGCTGGCCAAAGACGCCATGTCGGAGGGCACCA 81732
>seq295
Length=932878
Score = 123 bits (136), Expect = 4e-22
Identities = 134/178 (75%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024
||| ||||| ||||||||||| ||||| || || | | || ||||| | ||| |||
Sbjct 123561 AAGGCCATGAGCATCATGAACTCCTTTGTGAATGATGTCTTTGAGCGCATTGCCACAGAG 123620
Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084
||| ||||| || | | |||||||||| ||| ||| || |||||| | ||||||
Sbjct 123621 GCCTCGCGCCTAGCACAATACAACAAGCGCTCCACCATCACCAGCCGCGAGGTGCAGACC 123680
Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||||| |||||| | ||| || || ||||||| ||||||||| || ||||||||||
Sbjct 123681 GCCGTCCGCCTGCTGCTGCCGGGGGAGCTGGCCAAGCACGCCGTGTCTGAGGGCACCA 123738
>seq213
Length=1662576
Score = 113 bits (124), Expect = 6e-19
Identities = 163/229 (71%), Gaps = 6/229 (3%)
Strand=Plus/Minus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||| ||||| || || || ||||| |||| | ||| ||| ||| |||||
Sbjct 1439596 TACAAAGTGCTGAAACAAGTTCACCCGGACACCGGT-----ATC-TCCTCTAAGGCCATG 1439543
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
|||||||||||| ||||| |||||||| |||| ||||| | || || ||||
Sbjct 1439542 GGGATCATGAACTCCTTTGTGAACGACATCTTCGAGCGCATTGCGGGGGAAGCGTCTCGC 1439483
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||| | | ||||||||| || ||| | || |||||||||||||| ||||||
Sbjct 1439482 CTGGCTCATTACAACAAGCGATCAACCATCACTTCCCGGGAGATCCAGACCGCTGTGCGC 1439423
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| || || ||||||| || || || || ||||||||||
Sbjct 1439422 CTGCTTCTGCCGGGGGAGCTGGCCAAACATGCTGTGTCTGAGGGCACCA 1439374
Score = 111 bits (122), Expect = 2e-18
Identities = 129/174 (74%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028
||||| |||||||||||| ||||| |||||||| |||| || |||| || ||
Sbjct 1648007 CCATGGGGATCATGAACTCCTTTGTAAACGACATCTTCGAACGTATCGCTGGGGAAGCGT 1648066
Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088
||||||||| | | |||||||||| || ||| | || |||||||||||||| |
Sbjct 1648067 CTCGCCTGGCTCATTACAACAAGCGCTCAACCATCACTTCTCGGGAGATCCAGACCGCTG 1648126
Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|||||||| | ||| || || ||||||| || || || || ||||||||||
Sbjct 1648127 TGCGCCTGCTTTTGCCGGGGGAGCTGGCCAAACATGCGGTGTCTGAGGGCACCA 1648180
Score = 107 bits (118), Expect = 3e-17
Identities = 162/229 (71%), Gaps = 6/229 (3%)
Strand=Plus/Plus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||| ||||| || || || ||||| |||| | ||| ||| ||| |||||
Sbjct 1385004 TACAAAGTGCTGAAACAAGTTCACCCGGACACCGGT-----ATC-TCCTCTAAGGCCATG 1385057
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
|||||||||||| ||||| |||||||| |||| ||||| | || || ||||
Sbjct 1385058 GGGATCATGAACTCCTTTGTGAACGACATCTTCGAGCGCATTGCGGGGGAAGCGTCTCGC 1385117
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||| | | ||||||||| || ||| | || |||||||||||||| ||||||
Sbjct 1385118 CTGGCTCATTACAACAAGCGTTCAACTATCACTTCCCGGGAGATCCAGACCGCTGTGCGC 1385177
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| || || ||||| | || || || || ||||||||||
Sbjct 1385178 CTGCTTCTGCCGGGGGAGCTGGCGAAACATGCTGTGTCTGAGGGCACCA 1385226
Score = 93.3 bits (102), Expect = 6e-13
Identities = 126/176 (72%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024
||| ||||| ||||||||||| ||||| |||||||| |||| || |||| |||
Sbjct 1612284 AAGGCCATGGGCATCATGAACTCCTTTGTGAACGACATCTTCGAGCGTATCGCAGGGGAG 1612225
Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084
|| ||| ||||||| | |||||||||| || ||| | || ||||| ||||||
Sbjct 1612224 GCGTCTCGTCTGGCGCATTACAACAAGCGCTCGACTATCACTTCCCGGGAGATTCAGACC 1612165
Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140
|| || | ||| | ||| ||||| | |||| ||||| || || ||||||||
Sbjct 1612164 GCTGTAAGACTGCTGCTGCCGGGCGAGTTAGCCAAACACGCGGTGTCTGAGGGCAC 1612109
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7170230567792390
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |