Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq78565 134 1e-26 seq39 107 2e-18 >seq78565 Length=14964121 Score = 134 bits (148), Expect = 1e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| |||| || ||| ||| | || ||||||||||| || ||||| Sbjct 6183941 TCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAG 6183882 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | ||||| || || ||||| ||| || ||| | | | Sbjct 6183881 ATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTC 6183822 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||||| | || || |||| ||||| ||||| |||||||| ||||||||| Sbjct 6183821 TCAATGGTGTCGCTGGGCTCTACTTCCAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACA 6183762 Query 35726 AATATCTGCATT 35737 || ||||||||| Sbjct 6183761 AAGATCTGCATT 6183750 Score = 132 bits (146), Expect = 4e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| |||| || ||| ||| | || ||||||||||| || ||||| Sbjct 6184169 TCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAG 6184110 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | ||||| || || |||||| ||| || ||| | | | Sbjct 6184109 ATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTC 6184050 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||||| | || || || | ||||| ||||| |||||||| ||||||||| Sbjct 6184049 TCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACA 6183990 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 6183989 AAGATCTGCAT 6183979 Score = 132 bits (146), Expect = 4e-26 Identities = 146/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| |||| || ||| ||| | || ||||||||||| || ||||| Sbjct 6184397 TCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAG 6184338 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 |||| || ||||||||| | ||||| || || ||||| ||| ||| || || | | | Sbjct 6184337 ATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGGAT-TTTGGCTTTGACATT 6184279 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | || ||||| | ||||| ||||| |||||||| |||||||| Sbjct 6184278 CTCAATGGTGTCGCTGGGCTCTACCTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCAC 6184219 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 6184218 AAAGATCTGCAT 6184207 >seq39 Length=8077485 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| || | || ||||||||||| || ||||| Sbjct 4823411 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 4823470 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || || |||||| |||||| ||| | | | Sbjct 4823471 GATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATT 4823530 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | ||||| || || || |||| || ||||| Sbjct 4823531 CTCAATAGTGTCACTGGGCTCAACCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 4823590 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 4823591 AAAGATCTGCAT 4823602 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 |||||| | || | ||| |||||| || |||||||| || | | ||| || | || Sbjct 4823162 CAACACAAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGTGCGGCCATC 4823221 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 ||||||||||| || ||||| |||| || ||||||||| | || | || || ||||| Sbjct 4823222 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTC 4823281 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 | |||||| ||| | | | | | ||||| || | || ||||| | ||||| || Sbjct 4823282 CTGGATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCTAGGGTGATGGT 4823341 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || |||| || |||||||| |||||||| Sbjct 4823342 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4823374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450350723462600