Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03-
31] 78,595 sequences; 2,365,766,571 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq78565 134 1e-26
seq39 107 2e-18
>seq78565
Length=14964121
Score = 134 bits (148), Expect = 1e-26
Identities = 145/192 (76%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
|| || || |||||||| |||| || ||| ||| | || ||||||||||| || |||||
Sbjct 6183941 TCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAG 6183882
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
|||| || ||||||||| | ||||| || || ||||| ||| || ||| | | |
Sbjct 6183881 ATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTC 6183822
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725
| | |||||||| | || || |||| ||||| ||||| |||||||| |||||||||
Sbjct 6183821 TCAATGGTGTCGCTGGGCTCTACTTCCAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACA 6183762
Query 35726 AATATCTGCATT 35737
|| |||||||||
Sbjct 6183761 AAGATCTGCATT 6183750
Score = 132 bits (146), Expect = 4e-26
Identities = 144/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
|| || || |||||||| |||| || ||| ||| | || ||||||||||| || |||||
Sbjct 6184169 TCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAG 6184110
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
|||| || ||||||||| | ||||| || || |||||| ||| || ||| | | |
Sbjct 6184109 ATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTC 6184050
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725
| | |||||||| | || || || | ||||| ||||| |||||||| |||||||||
Sbjct 6184049 TCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACA 6183990
Query 35726 AATATCTGCAT 35736
|| ||||||||
Sbjct 6183989 AAGATCTGCAT 6183979
Score = 132 bits (146), Expect = 4e-26
Identities = 146/192 (76%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
|| || || |||||||| |||| || ||| ||| | || ||||||||||| || |||||
Sbjct 6184397 TCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAG 6184338
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664
|||| || ||||||||| | ||||| || || ||||| ||| ||| || || | | |
Sbjct 6184337 ATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGGAT-TTTGGCTTTGACATT 6184279
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | |||||||| | || ||||| | ||||| ||||| |||||||| ||||||||
Sbjct 6184278 CTCAATGGTGTCGCTGGGCTCTACCTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCAC 6184219
Query 35725 AAATATCTGCAT 35736
||| ||||||||
Sbjct 6184218 AAAGATCTGCAT 6184207
>seq39
Length=8077485
Score = 107 bits (118), Expect = 2e-18
Identities = 139/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| || | || ||| || | || ||||||||||| || |||||
Sbjct 4823411 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 4823470
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| || ||||||||| | || | || || |||||| |||||| ||| | | |
Sbjct 4823471 GATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATT 4823530
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | ||||| || | || ||||| | ||||| || || || |||| || |||||
Sbjct 4823531 CTCAATAGTGTCACTGGGCTCAACCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 4823590
Query 35725 AAATATCTGCAT 35736
||| ||||||||
Sbjct 4823591 AAAGATCTGCAT 4823602
Score = 105 bits (116), Expect = 6e-18
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583
|||||| | || | ||| |||||| || |||||||| || | | ||| || | ||
Sbjct 4823162 CAACACAAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGTGCGGCCATC 4823221
Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643
||||||||||| || ||||| |||| || ||||||||| | || | || || |||||
Sbjct 4823222 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTC 4823281
Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703
| |||||| ||| | | | | | ||||| || | || ||||| | ||||| ||
Sbjct 4823282 CTGGATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCTAGGGTGATGGT 4823341
Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| || |||| || |||||||| ||||||||
Sbjct 4823342 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4823374
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450350723462600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |