Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq78565 122 9e-23 seq39 104 2e-17 seq140 82.4 8e-11 >seq78565 Length=14964121 Score = 122 bits (134), Expect = 9e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| ||| |||| || | ||| || |||||||| || || |||||||||||| Sbjct 6183977 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 6183918 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| || || ||||| |||| | |||||| || || || Sbjct 6183917 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 6183858 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| ||||| ||||| ||||| || | |||||| | || || Sbjct 6183857 ATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACT 6183798 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || |||||||| || || || ||||| || || || |||||||| Sbjct 6183797 TCCAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATTTT 6183748 Score = 120 bits (132), Expect = 3e-22 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 134490 CCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACG 134549 |||| ||| |||| || | ||| || |||||||| || || |||||||||||| | | Sbjct 6184430 CCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGG 6184371 Query 134550 GTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATG 134609 ||| | || || ||||| || || ||||| |||| | |||||| || || || ||| Sbjct 6184370 GTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATG 6184311 Query 134610 CCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCG 134669 |||||||| ||||| ||||| |||||| || | |||||| | || || || Sbjct 6184310 CCTTCTTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCGCTGGGCTCTACCTCT 6184251 Query 134670 AGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || |||||||| || || || ||||| || || || ||||| Sbjct 6184250 AGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6184207 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| ||| |||| || | ||| || |||||||| || || |||||||||||| Sbjct 6184205 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 6184146 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| || || ||||| |||| | |||||| || || || Sbjct 6184145 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 6184086 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || || ||||| ||||| || | |||||| | || || Sbjct 6184085 ATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACT 6184026 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || |||||||| || || || ||||| || || || ||||| Sbjct 6184025 TCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6183979 >seq39 Length=8077485 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||||||| ||||| |||||||| ||||| || ||||||||||| Sbjct 4823148 CCACCCCTCAGACGCAACACAAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGAT 4823207 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | |||||| || || || Sbjct 4823208 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGG 4823267 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || || || || ||||| || | ||||| | || || Sbjct 4823268 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCAACC 4823327 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || || || || ||||| Sbjct 4823328 TCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4823374 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || |||| ||| ||||| || ||||| ||||| || ||||||||||| Sbjct 4823376 CCACCTCTCAGACGCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4823435 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | |||||| || || || Sbjct 4823436 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGG 4823495 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || || || || ||||| || | ||||| | || || Sbjct 4823496 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCAACC 4823555 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || ||||| || || || | || || || || || ||||| ||| Sbjct 4823556 TCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTG 4823606 >seq140 Length=3053534 Score = 82.4 bits (90), Expect = 8e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 8233 GCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGC 8292 ||||| || || | ||| | ||| ||||| | || |||||||||||||| ||| |||| Sbjct 15756 GCCATCATAGAGTCTCAGACCGAGACCGGGACACCTTACATGCTGTACAAGGACTCTTGT 15697 Query 8293 AACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAA 8352 || |||||||| || ||| |||| ||||| |||||||| |||||| | ||| Sbjct 15696 AATAGGAAAAGCAACCAGCAGAACCTGGGAACCATCAAGTGCAGCAACCTGTGCACAGAA 15637 Query 8353 ATTGTACAGTACA 8365 || || |||||| Sbjct 15636 ATAGTGGAGTACA 15624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504901877659400