Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03-
31] 78,595 sequences; 2,365,766,571 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq135 129 8e-25
seq78549 120 4e-22
>seq135
Length=2957239
Score = 129 bits (142), Expect = 8e-25
Identities = 110/136 (81%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
||||||||| ||||| | || || || ||||| ||||||||||| ||||| | ||| |
Sbjct 2809036 CCTCATCTCGGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATCAGACCCCTCTTCT 2808977
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| |||||||| || ||||||||||| || || |||||||| ||||| ||||| ||||| |
Sbjct 2808976 TCAGCCAAAAAATAGCAGCAAAAGAACCTGAGAAGAAGATCCCTTCCACTGCGGCAAAGG 2808917
Query 39759 CAACAAGTCTCTCTCC 39774
|||| | |||||| ||
Sbjct 2808916 CAACCACTCTCTCCCC 2808901
Score = 93.3 bits (102), Expect = 6e-14
Identities = 80/99 (81%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 40115 ACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGA 40174
|| ||||| |||||||| || || || | ||||||||| ||||||||||||||||| |
Sbjct 2796812 ACCTCTTCTGCTGTCCAGAAGGAAGCTTGTGCCTTTTTATACATGTTCCATATATCCGGG 2796753
Query 40175 TATTGTATTGGAAAAATAACAAATCTATTTGGATTTTTT 40213
||||| | ||| || || ||||||||| |||||||||
Sbjct 2796752 TATTGGAGTGGGAAGATGACAAATCTACGAGGATTTTTT 2796714
>seq78549
Length=11360908
Score = 120 bits (132), Expect = 4e-22
Identities = 101/124 (81%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| || || | ||| |||||||| |||||||||||||||| || | ||| |
Sbjct 7628609 CCTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCT 7628668
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| | |||||| |||| ||||| || ||||| |||||||| ||||| ||||||||||| |
Sbjct 7628669 TCAACCAAAAGATGGATGCAAAGGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAAAG 7628728
Query 39759 CAAC 39762
| ||
Sbjct 7628729 CTAC 7628732
Score = 109 bits (120), Expect = 8e-19
Identities = 108/139 (78%), Gaps = 3/139 (2%)
Strand=Plus/Plus
Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTC---TTGTGACATAACTCCCATTT 39326
|||||||||| |||| |||| ||| |||||| || ||||||||||||||| |
Sbjct 7626560 TTTAAAAGTCTGCATCCAAAGTGAAAGAGTTATCTGTGGATTTTGACATAACTCCCATCT 7626619
Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386
| |||||||| || || || ||||| || || ||||| |||||||||| || ||||| |
Sbjct 7626620 TCTGGTATTCTCCTACTCGCTTCTCAAAGAAGTTAGTCTTGCCTTCCAGCGAGATATTCT 7626679
Query 39387 CCATGAAATCAAACGGATT 39405
|||| || ||||| |||||
Sbjct 7626680 CCATAAAGTCAAATGGATT 7626698
Score = 96.9 bits (106), Expect = 5e-15
Identities = 85/106 (80%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936
|||||||| || |||||||| | |||||| |||||||||||||| |||||||| || ||
Sbjct 7631698 ATCTTTAATGTAAGTATCTATGAGCAGACTGTACATTTCTGAATGTATGTTTTCCATAGC 7631757
Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982
||||| || || || ||||| | |||||| || | ||||| |||
Sbjct 7631758 AATCTGGAAGCCATAGAAACAGCGTGCTTCTGTTACCTGTACTTCT 7631803
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686233955035800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |