Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq78526 118 8e-22 seq78549 114 1e-20 seq135 91.5 1e-13 seq8 86.0 5e-12 >seq78526 Length=7101863 Score = 118 bits (130), Expect = 8e-22 Identities = 103/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 41076 TGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGAC 41135 || |||||||| ||| |||||||||||||| || || |||||||| ||||| || ||| Sbjct 5469083 TGCCAGTTTTATGTTCTAAATGGTGAACTGTCTTGCCAGTTGTATCAGAGATCTGGAGAC 5469024 Query 41136 ATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCA 41195 |||||||| ||||| || || || || || || ||| | |||||||| ||||||||||| Sbjct 5469023 ATGGGACTGGGGGTGCCTTTCAATATCGCCAGCTATTCACTGCTCACATATATGATTGCC 5468964 Query 41196 CACGTTAC 41203 || || || Sbjct 5468963 CATGTCAC 5468956 >seq78549 Length=11360908 Score = 114 bits (126), Expect = 1e-20 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| || || |||||||||| ||||| ||||| || || ||||| || ||||| Sbjct 7631805 CAAGAAGTACAGGTAACAGAAGCACGCTGTTTCTATGGCTTCCAGATTGCTATGGAAAAC 7631746 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||||||||| || |||||||| ||||| |||||| Sbjct 7631745 ATACATTCAGAAATGTACAGTCTGCTCATAGATACTTACATTAAAGAT 7631698 >seq135 Length=2957239 Score = 91.5 bits (100), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 3/141 (2%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || |||||||| ||||| |||||||| ||||||| |||||||| || ||||| | Sbjct 2821129 AAAATCCTTTTGATTTCATGGAGAATATTTCACTGGAAGGAAAAACAAATTTCTTTGAGA 2821188 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATGATA---ACAAGTGACAATAAATTTA 44609 | || ||| ||| |||||||| | | || ||| | |||| |||||| || | Sbjct 2821189 AGCGGGTTTCAGAGTATCAGCGCTTTGCAGTTATGGCAGAAACAACAGACAATGTTTTCA 2821248 Query 44610 CTACGGATGAAGATTTCTAAT 44630 | ||||| ||||||||||| Sbjct 2821249 CACTGGATGCAGATTTCTAAT 2821269 >seq8 Length=51558079 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 47230 AGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGACAATGCAGGAAAAAC 47289 |||||| ||| | ||||| || ||| || ||||||| || || |||||||| |||||||| Sbjct 659312 AGGACTGTATAAGAAATCTGGTAAACTAGTATTTCTTGGATTGGACAATGCTGGAAAAAC 659253 Query 47290 GGCATTACTCCACATGCTCAAATACAATTGCATGAAAGAGCATAACCCTACATTACATCC 47349 || | || |||||||||||| | | | || | | ||| ||||||||||||||| Sbjct 659252 TACACTGCTGCACATGCTCAAAGATGACAGACTGGGACAACATGTCCCTACATTACATCC 659193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397075286212975