Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq78578 215 2e-50 seq39 143 8e-29 seq78565 138 3e-27 seq120 107 6e-18 seq2 98.7 3e-15 seq200 96.9 1e-14 seq40 89.7 2e-12 >seq78578 Length=5143557 Score = 215 bits (238), Expect = 2e-50 Identities = 379/547 (69%), Gaps = 4/547 (1%) Strand=Plus/Minus Query 349760 GaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACA 349819 |||| ||| | ||||| ||||| | |||||||| ||||||||||| || | || || Sbjct 2805054 GAAAGGAATGTCCTTATCTTTGACCTTGGTGGTGGCACTTTTGATGTTTCGATCCTCACT 2804995 Query 349820 CTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAA 349879 |||| || || || |||||||| || ||||||| |||||||| || | ||||| || Sbjct 2804994 ATTGAGGATGGCATCTTTGAAGTAAAGTCAACTGCAGGTGATACCCACTTGGGTGGGGAG 2804935 Query 349880 GATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAA-AT 349938 || |||||||| ||| | || ||||| || ||||| |||||| |||| || | Sbjct 2804934 GACTTTGATAACCGTATGGTCAACCATTTCATTGCTGAATTCAAGCGT-AAGCACAAGAA 2804876 Query 349939 TGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAA 349998 || ||| || || |||||| | || || || | ||||| ||||||||||| || Sbjct 2804875 GGACATTACTGAGAACAAGAGAGCAGTTCGCCGTCTCCGCACTGCTTGTGAACGTGCAAA 2804816 Query 349999 GCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAA 350058 |||| || | || |||| || || || |||||| ||||| ||||| ||| |||| Sbjct 2804815 GCGTACCCTCTCCTCTAGCACTCAGGCCAGTATTGAGATTGACTCTCTCTATGAGGGCAT 2804756 Query 350059 AGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAG 350118 ||||| | | || ||||| | ||||| |||||||| ||| | ||||| || | Sbjct 2804755 TGATTTTTACACCTCAATTACCAGAGCTCGTTTTGAAGAGTTAAATGCTGATCTGTTCCG 2804696 Query 350119 AGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGAT 350178 | || ||||||| ||||| || | | ||||| ||| | |||| ||||| Sbjct 2804695 TGGCACTCTGGATCCCGTGGAGAAGGCCCTGCGGGATGCCAAACTAGACAAATCACAGAT 2804636 Query 350179 TGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATC 350238 |||| | || | |||||||| ||||| || || || || |||| | | || Sbjct 2804635 CCATGATATTGTACTGGTTGGTGGGTCTACCCGAATCCCCAAGATTCAGAAACTGCTGCA 2804576 Query 350239 TGAGTTTTTTAATGGCAAAGAACCTTCT-AGATCAATTAATCCAGATGAAGCTGTTGCAT 350297 || || || ||||||||||| | | ||| | || ||||| ||||||||||| || | Sbjct 2804575 GGATTTCTTCAATGGCAAAGAGCTGAATAAGAGC-ATCAATCCTGATGAAGCTGTGGCTT 2804517 Query 350298 ATGGTGC 350304 ||||||| Sbjct 2804516 ATGGTGC 2804510 Score = 136 bits (150), Expect = 1e-26 Identities = 352/531 (66%), Gaps = 4/531 (1%) Strand=Plus/Plus Query 183262 CTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATTCTTTGCCATT-A 183320 |||||||||| || ||||||||||| || || || | | ||||||||||| | Sbjct 2804508 CTGCACCATAAGCCACAGCTTCATCAGGATTGATGCTCTTATTCAGCTCTTTGCCATTGA 2804567 Query 183321 AAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCGACTAATACT 183380 | |||| ||| |||| || ||||| || || |||| || || ||||| || | ||| Sbjct 2804568 AGAAATCCTG-CAGCAGTTTCTGAATCTTGGGGATTCGGGTAGACCCACCAACCAGTACA 2804626 Query 183381 ACTTCATCGATAT-TACTTTTACTAATTTGTGAATCTTTTAAAACTTTTTCAACAGGGTC 183439 | |||| ||| | | ||| ||| |||| | ||| | | || || || || || Sbjct 2804627 ATATCATGGATCTGTGATTTGTCTAGTTTG-GCATCCCGCAGGGCCTTCTCCACGGGATC 2804685 Query 183440 CATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCTTGCTCTAGTTAAAGATGa 183499 || ||| | || | ||| | ||||||||| || | ||||| || | || | Sbjct 2804686 CAGAGTGCCACGGAACAGATCAGCATTTAACTCTTCAAAACGAGCTCTGGTAATTGAGGT 2804745 Query 183500 aaaaaaGTCAATACCATTATATAAGGAATCAATTTCAATCGATGTTTGTGTAGATGATGA 183559 |||| ||||| || | ||| | || ||||| ||||| | || || || || Sbjct 2804746 GTAAAAATCAATGCCCTCATAGAGAGAGTCAATCTCAATACTGGCCTGAGTGCTAGAGGA 2804805 Query 183560 TAATGTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAATGATCTTGGATTATC 183619 | || | || || |||||||| || || | || || || | || ||| || || Sbjct 2804806 GAGGGTACGCTTTGCACGTTCACAAGCAGTGCGGAGACGGCGAACTGCTCTCTTGTTCTC 2804865 Query 183620 TGTAATATCTTGTTTATGTTTTCTTTTAAATTCAGTAATAAAATGTTGAAGTAATCTTGT 183679 ||||| || | || || || | || ||||||| ||| ||||| | | | | | Sbjct 2804866 AGTAATGTCCTTCTTGTGCTTACGCTTGAATTCAGCAATGAAATGGTTGACCATACGGTT 2804925 Query 183680 ATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCC 183739 |||||| || || ||||| || || ||||| || ||||| | || |||||||| || || Sbjct 2804926 ATCAAAGTCCTCCCCACCCAAGTGGGTATCACCTGCAGTTGACTTTACTTCAAAGATGCC 2804985 Query 183740 GTCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790 || |||||| | | || || |||||||| || |||||||| | ||||| Sbjct 2804986 ATCCTCAATAGTGAGGATCGAAACATCAAAAGTGCCACCACCAAGGTCAAA 2805036 Score = 105 bits (116), Expect = 2e-17 Identities = 122/163 (75%), Gaps = 1/163 (1%) Strand=Plus/Minus Query 349598 ACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCA 349657 || || ||| ||||||| | || ||||||||||| || ||||| ||||||| || Sbjct 2805330 ACTGTTACTAATGCTGTGGTCACAGTACCAGCCTACTTCAATGACTCCCAGCGCCAGGCC 2805271 Query 349658 ACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACT 349717 |||||||||||||| | |||||| || | ||||| || | || || |||||||| || Sbjct 2805270 ACAAAAGATGCTGGAACCATTGCAGGTCTCAATGTGCTCCGGATCATCAATGAACCGACA 2805211 Query 349718 GCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAG 349760 ||||| || ||||| ||||| | || || | | |||| |||| Sbjct 2805210 GCTGCTGCTATTGCTTATGGTTTGGACAAGAAG-GTGAGCAAG 2805169 >seq39 Length=8077485 Score = 143 bits (158), Expect = 8e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 140529 ACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCA 140588 ||||| || || || ||||| || || || || || ||||||| || || |||||||| Sbjct 4823166 ACAAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGTGCGGCCATCTTCC 4823225 Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGA 140648 || || || ||||||||||| || | ||||| ||||| || || |||||||| ||||| Sbjct 4823226 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGG 4823285 Query 140649 ATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTT 140708 || ||||| || ||||| ||||| | ||| || ||||| || || || | ||||| Sbjct 4823286 ATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCTAGGGTGATGGTCTTG 4823345 Query 140709 CCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || ||||| |||||||| Sbjct 4823346 CCAGTCAGGGTCTTCACAAAGATCTGCAT 4823374 Score = 141 bits (156), Expect = 3e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| | | | || ||||| || || || ||||| || || || || || || Sbjct 4823372 CATACCACCTCTCAGACGCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 4823431 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || |||||||| || || || ||||||||||| || | ||||| ||||| Sbjct 4823432 AGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG 4823491 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || |||||||| ||||| || ||||| || ||||| ||||| | ||| || || Sbjct 4823492 TGGGATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTC 4823551 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || | ||||| || || || || || ||||| |||||||| Sbjct 4823552 AACCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4823602 >seq78565 Length=14964121 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | || || | || ||||| || ||||| || || || || || Sbjct 6184209 CATACCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTC 6184150 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || ||||||||||| || || ||||| |||||||| || | ||||| || || Sbjct 6184149 GGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGG 6184090 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| |||||||| ||||| ||||| || || ||||| ||||| | || || || Sbjct 6184089 AGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTC 6184030 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || | || || || || | ||||| ||||| |||||||| Sbjct 6184029 TACTTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6183979 Score = 134 bits (148), Expect = 4e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | || || | || ||||| || ||||| || || || || || Sbjct 6183981 CATACCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTC 6183922 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || ||||||||||| || || ||||| |||||||| || | ||||| || || Sbjct 6183921 GGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGG 6183862 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| |||||||| || || ||||| || || ||||| ||||| | || || || Sbjct 6183861 AGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTC 6183802 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 ||||| || || | || || || || | ||||| ||||| ||||||||| Sbjct 6183801 TACTTCCAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATT 6183750 Score = 129 bits (142), Expect = 2e-24 Identities = 156/211 (74%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 140527 GAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTT 140586 || |||| || ||||| || ||||| || || || || || || | || |||||||||| Sbjct 6184416 GACCAAG-TGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTT 6184358 Query 140587 CAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCT 140646 | || || ||||| |||||||| || | ||||| || |||||||| |||||||| || | Sbjct 6184357 CCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTT 6184298 Query 140647 GAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCT 140706 | ||||| ||||| ||||| ||||| | || || || || || || || | || | Sbjct 6184297 GGATTTTGGCTTTGACATTCTCAATGGTGTCGCTGGGCTCTACCTCTAGGGTGATGGTTT 6184238 Query 140707 TTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || | ||||| ||||| |||||||| Sbjct 6184237 TGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6184207 >seq120 Length=3203753 Score = 107 bits (118), Expect = 6e-18 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 350107 GGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTC 350166 |||||| || | | || ||| | |||||| | ||||| || ||||| | | || Sbjct 1038089 GGATCTGTTCCGTTCCACCATGAAGCCTGTGCAGAAAGTTCTAGAAGATTCTGACCTGA- 1038031 Query 350167 CAAAAATCAGA--TTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTT 350224 | |||||||| ||||||| | || | || ||||| ||||| || || || || | Sbjct 1038030 -AGAAATCAGACATTGATGAGATTGTACTTGTGGGTGGCTCTACTCGAATCCCCAAGATA 1037972 Query 350225 CAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGAT 350284 |||||| | | ||||| || ||||||||||| |||||| | || ||||||||| Sbjct 1037971 CAACAGCTTGTTAAAGAGTTCTTCAATGGCAAAGAGCCTTCTCGTGGCATCAATCCAGAT 1037912 Query 350285 GAAGCTGTTGCATATGGTGCTGCTGTTCAGGC 350316 || || ||||| |||||||| ||||||||||| Sbjct 1037911 GAGGCCGTTGCTTATGGTGCCGCTGTTCAGGC 1037880 Score = 96.9 bits (106), Expect = 1e-14 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 183250 CAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATT 183309 |||| |||||||| |||||||| ||||| || |||||||| || || |||||| | Sbjct 1037878 CAGCCTGAACAGCGGCACCATAAGCAACGGCCTCATCTGGATTGATGCCACGAGAAGGCT 1037937 Query 183310 CTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCAC 183369 |||||||||| || || ||| || | ||||| || || || |||| ||| || |||| Sbjct 1037938 CTTTGCCATTGAAGAACTCTTTAACAAGCTGTTGTATCTTGGGGATTCGAGTAGAGCCAC 1037997 Query 183370 CGACTAATACTACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTT 183429 | || | ||| | ||||| || | ||| | | | ||||||| || |||||| | Sbjct 1037998 CCACAAGTACAATCTCATCAATGTCTGATTTCTTCAGGTCAGAATCTTCTAGAACTTTCT 1038057 Query 183430 CAACAGGGTCCATAGT 183445 ||||| | ||| || Sbjct 1038058 GCACAGGCTTCATGGT 1038073 >seq2 Length=68452538 Score = 98.7 bits (108), Expect = 3e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 140607 ATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTA 140666 || || | |||||||||||||||||||||||| |||||||| || || || || ||||| Sbjct 8820688 ATAAGTCATTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTCACATTT 8820629 Query 140667 TCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || | |||||| || ||||| ||||| || | || || ||||| || || || || Sbjct 8820628 TCTATAGTATCAGAAGGCTCAACCTCAAGGGTGATGGTTTTCCCGGTCAGGGTCTTCAC 8820570 >seq200 Length=1898511 Score = 96.9 bits (106), Expect = 1e-14 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 130661 CATACCATAGAACACTTTATAATTTTCACCATTTTCTTCAACAACTTCCCCAGCACATTC 130720 ||| || ||||||| ||| || | ||||||| ||| | ||| || |||||||||| Sbjct 1622831 CATCCCGTAGAACAGTTTCACCTTCTTGCCATTTTTTTCTAGAACCTCTCCAGCACATTG 1622772 Query 130721 ATCATGTGCAGCTAACATTCCTCCAAGCATAACAAAATCAGCTCCTGCTCC 130771 ||| || | || ||||||||||||||||||||||||||||| || ||||| Sbjct 1622771 ATCGTGGCCTGCAAACATTCCTCCAAGCATAACAAAATCAGCACCAGCTCC 1622721 >seq40 Length=7497131 Score = 89.7 bits (98), Expect = 2e-12 Identities = 81/101 (80%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 140536 GAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTT 140595 ||||| || || | ||||||||||| || ||||| | || || |||||||| | || | Sbjct 7303502 GAAGA-TACACACCTTTTGAATATTGTAGTCAGACAGCGTGCGTCCATCTTCCAACTGCT 7303560 Query 140596 TTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCT 140636 | |||||||| || || ||||| |||||||||||||||||| Sbjct 7303561 TGCCAGCAAAAATAAGTCGTTGTTGATCAGGAGGAATTCCT 7303601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1513728541186785