Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq175 89.7 6e-13 seq135 89.7 6e-13 seq140 84.2 2e-11 >seq175 Length=2494618 Score = 89.7 bits (98), Expect = 6e-13 Identities = 117/159 (74%), Gaps = 11/159 (7%) Strand=Plus/Minus Query 159479 CGCTTCTGGGGGTCGCTCAGGACCTCATAGGCCTCCTGGACTTTCTTGAA---CTTCTCG 159535 ||||||| ||||||||| || || || |||||||| ||| | |||||| || |||| Sbjct 2262709 CGCTTCTTGGGGTCGCTGAGCACGTCGTAGGCCTCGGCGACCTCCTTGAAGCGCTCCTCG 2262650 Query 159536 GCGTCACCGCCCTTGT------CGGGGTGGT-GCTCGCGGGCAAGTTTGCGGTACGCCTT 159588 ||||| | |||||| ||||||||| || | | || | |||||||| ||||| Sbjct 2262649 GCGTCGGGGTCCTTGTTCTTGTCGGGGTGGTAGCGC-AGCGCCTGCTTGCGGTAGGCCTT 2262591 Query 159589 TTTGATGTCGGTCTCCGAGGCGCTCCGGTCGAGGCCTAG 159627 ||||||||| |||||||||| ||| | ||||| || Sbjct 2262590 CTTGATGTCGTCGTCCGAGGCGCCGCGGGCCAGGCCCAG 2262552 >seq135 Length=2957239 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 |||||||| ||||||||||| || || || ||||||||| ||||| || ||| | || Sbjct 2808928 GTGGAAGGGATCTTCTTCTCAGGTTCTTTTGCTGCTATTTTTTGGCTGAAGAAGAGGGGT 2808987 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 || ||||| || |||| |||||||| ||||| ||| ||| || |||| Sbjct 2808988 CTGATGCCTGGACTGACATTCTCCAATGAGCTCATTAGCCGAGATGAGG 2809036 >seq140 Length=3053534 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 ||||||||||||| || |||||||||| || | ||||| ||||||||| ||| Sbjct 15635 ATTTCTGTGCACAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGGTTGCTTTTCCTA 15694 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 ||||| | ||||||||| |||||| || ||||||||||| Sbjct 15695 TTACAAGAGTCCTTGTACAGCATGTAAGGTGTCCCGGTCTC 15735 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312 ||||||||||| || |||||||||||||||||||||||| ||||| || || || ||| Sbjct 19959 AGCTGTTTCCTGCTGTGTATGAAGGATGACAGCATTGAGGGAATCTATGACACTCTAAAG 19900 Query 19313 GAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG 19350 | || |||| |||||||| | |||| || || || Sbjct 19899 CATTGTGCGCTGATCTCCAAATCTGCCGGTGGAATTGG 19862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547985908666800