Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq78553 100 3e-16 seq2 100 3e-16 seq78549 91.5 2e-13 >seq78553 Length=7957922 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | |||||| | || || ||||| ||||| || || ||||| Sbjct 5755020 GTGAAGATGTATCGAGGGCTGGCAGAGTCTTTTCCACCATGCAGCCTGGTACCGAACTGA 5755079 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| || ||||||||||| ||| |||||||| |||||||||||||| | | Sbjct 5755080 CCAATGGGCTGTAGCAGGTTGAGGTTATTGCTTCCCACGAAGTTCTGAGCCAAATTAATA 5755139 Query 152149 ATCGT 152153 || || Sbjct 5755140 ATGGT 5755144 >seq2 Length=68452538 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| ||| ||||||||||| |||||| ||| | ||||| || || Sbjct 20431519 GTGAAAATATAACGAGGGCTGGCAGCATCCTTCCCACCATGAAGCCTGGTACCAAACTGA 20431578 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| || || || | ||||| || |||||||| ||||||||||||||| Sbjct 20431579 CCAATAGGCTGCAGTAGATTAACATTGTTACTTCCAACAAAGTTCTGAGCCAAGTTGACA 20431638 Query 117425 ATCGT 117429 || || Sbjct 20431639 ATAGT 20431643 >seq78549 Length=11360908 Score = 91.5 bits (100), Expect = 2e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||||| | || |||||||| | || | ||||||| Sbjct 7628611 TCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCTTC 7628670 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 ||||||||||||| ||||| ||| ||||||||| ||||| || ||||| || Sbjct 7628671 AACCAAAAGATGGATGCAAAGGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAAAGCT 7628730 Query 74892 ACAAGGCGTT 74901 || | |||| Sbjct 7628731 ACTACACGTT 7628740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546678394481000