Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03-
31] 78,595 sequences; 2,365,766,571 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq78565 152 6e-32
seq2 93.3 5e-14
seq140 91.5 2e-13
>seq78565
Length=14964121
Score = 152 bits (168), Expect = 6e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| || || | || ||||| || || || || || || ||| | |
Sbjct 6183979 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGC 6184038
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| ||| | ||||| ||||| |||||||| || || |||||||||||||||
Sbjct 6184039 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGACCAG 6184098
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || || ||||| || ||||| || || |||| || ||||| | ||||| ||
Sbjct 6184099 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 6184158
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || ||||||||||| || | ||| |||| || || |||||
Sbjct 6184159 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGG 6184205
Score = 150 bits (166), Expect = 2e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| |||||||| || || | || ||||| || || || || || || ||| | |
Sbjct 6183750 AATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTGGAAGTAGAGCCCAG 6183809
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | ||||| ||| | ||||| ||||| || ||||| || || ||||||||||||||
Sbjct 6183810 CGACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCA 6183869
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||| | || || ||||| || ||||| || || |||| || ||||| | ||||| ||
Sbjct 6183870 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 6183929
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || ||||||||||| || | ||| |||| || || |||||
Sbjct 6183930 CATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGG 6183977
Score = 143 bits (158), Expect = 3e-29
Identities = 166/224 (74%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| || || | || ||||| || || || || ||||| ||| | |
Sbjct 6184207 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAGGTAGAGCCCAGC 6184266
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| ||| | || || ||||| || ||||| || || |||||||||||||||
Sbjct 6184267 GACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 6184326
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || || ||||| || ||||| || || |||| || ||||| | ||||| ||
Sbjct 6184327 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 6184386
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGG 27629
|||| || ||||||||||| || | ||| |||| || || ||
Sbjct 6184387 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGG 6184430
>seq2
Length=68452538
Score = 93.3 bits (102), Expect = 5e-14
Identities = 95/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|| ||||| || ||||| || || || || |||||||||||| | ||||| || | |
Sbjct 8820570 GTGAAGACCCTGACCGGGAAAACCATCACCCTTGAGGTTGAGCCTTCTGATACTATAGAA 8820629
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
||| ||||||| || || ||||| ||||| ||||||||||| || ||||| | || |||
Sbjct 8820630 AATGTGAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAATGACTTATT 8820689
Query 27538 TTTG 27541
| ||
Sbjct 8820690 TATG 8820693
Score = 82.4 bits (90), Expect = 9e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184
|| ||||||||| | |||||||||||||| || || || | || |||| ||||
Sbjct 20431643 ACTATTGTCAACTTGGCTCAGAACTTTGTTGGAAGTAACAATGTTAATCTACTGCAGCCT 20431584
Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244
||| |||||||| ||| |||| ||||| ||||||||||| ||| | ||||| ||
Sbjct 20431583 ATTGGTCAGTTTGGTACCAGGCTTCATGGTGGGAAGGATGCTGCCAGCCCTCGTTATATT 20431524
Query 32245 TTCAC 32249
|||||
Sbjct 20431523 TTCAC 20431519
>seq140
Length=3053534
Score = 91.5 bits (100), Expect = 2e-13
Identities = 119/165 (72%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007
|||| || ||||| ||||||| || |||| || || |||||||| | ||||||
Sbjct 15627 ACTCCACTATTTCTGTGCACAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGGTTGC 15686
Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067
|| || |||| ||||||||| |||||| || || ||||||||| ||| ||||
Sbjct 15687 TTTTCCTATTACAAGAGTCCTTGTACAGCATGTAAGGTGTCCCGGTCTCGGTCTGAGACT 15746
Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGA 81112
| |||||| | ||| | || | ||||| |||||||||||||
Sbjct 15747 CTATGATGGCATACCAGAGCTGCTGGGCCTTCACCACCTTGCGGA 15791
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 569750105676400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |