Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq3 104 3e-17 >seq3 Length=75876001 Score = 104 bits (114), Expect = 3e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 32661 ATAGCCAGAGCCTTGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATT 32720 ||||| | || || |||| || ||| |||| ||||| || || || | || || || Sbjct 66048343 ATAGCTGGTGCTTTATGGTGGTACTTTGTCTCAAAAGGAATTGAGTACTTGGACACAATA 66048402 Query 32721 TTCTTCATAATGAGAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTT 32780 || ||||| |||| ||||||||||||||| | || || | || || || |||||||| Sbjct 66048403 TTTTTCATCTTGAGGAAGAAATTTAACCAAATCAGTTTCCTTCATGTCTATCACCATTTC 66048462 Query 32781 ACCATGTTTACTTTAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACA 32830 || ||||| || || | ||||| || || || ||| || |||||||||| Sbjct 66048463 ACTATGTTCACCTTGTGGTGGATTGGTATCAAGTGGGTTCCAGGAGGACA 66048512 Score = 102 bits (112), Expect = 1e-16 Identities = 98/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 32982 GGTCATACAGCAATGTCTATATATATAGATTGTCCGTTCCCTAGATGGATACAGTGGGCT 33041 || || ||||| |||||||| ||||| || ||||| ||||||| |||||| || |||| | Sbjct 66056721 GGCCACACAGCCATGTCTATTTATATCGACTGTCCCTTCCCTAAATGGATGCACTGGGGT 66056780 Query 33042 GTTATTATATATTCTATCACCTTTATCATCCTTTTTGGCAACTTTTA-TCTCAGGACATA 33100 || || || ||| | ||||||||||| || | ||||| ||||| || | || ||||||| Sbjct 66056781 GTAATGATCTATGCCATCACCTTTATTTTCTTGTTTGGTAACTTCTACTATC-GGACATA 66056839 Query 33101 TAA 33103 ||| Sbjct 66056840 TAA 66056842 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 32832 GCATTTTTTGGAGCACAGATAAATTCTTTTATACATGTTATAATGTATAGTTATTACGGA 32891 || ||||||||||| || || ||||||||||| |||||| | ||||| | || || ||| Sbjct 66054388 GCTTTTTTTGGAGCCCAAATGAATTCTTTTATTCATGTTGTTATGTACATGTACTATGGA 66054447 Query 32892 TTAACAGCAATAGGTCCTTCCTTGCGAAAATATCTATGGTGGAAAAAATATTTAACTATC 32951 ||| | || || ||| || | |||||||| ||||||||| ||| || || || Sbjct 66054448 TTAGCTGCCTGTGGCCCTAAATTTCAGAAATATCTGTGGTGGAAACGATACTTGACCATA 66054507 Query 32952 ATACAATTG 32960 |||||||| Sbjct 66054508 TTACAATTG 66054516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 602588212562800