Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq78526 120 3e-22 seq70 111 1e-19 >seq78526 Length=7101863 Score = 120 bits (132), Expect = 3e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || ||||| | || |||||||| ||||| | || |||||||| | ||| ||||| Sbjct 5468950 AGGCCTGTGACATGGGCAATCATATATGTGAGCAGTGAATAGCTGGCGATATTGAAAGGC 5469009 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || ||||| ||||||||| | |||||||| ||||| |||||||| || || || ||| | Sbjct 5469010 ACCCCCAGTCCCATGTCTCCAGATCTCTGATACAACTGGCAAGACAGTTCACCATTTAGA 5469069 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||||||||| | | ||| |||||||||| |||||| Sbjct 5469070 ACATAAAACTGGCACAGAGCGTGGCATGGAGGCAAAACCAT 5469110 >seq70 Length=5566888 Score = 111 bits (122), Expect = 1e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||| |||||||||||||| |||||||| | || || || |||||||| Sbjct 1249774 GTGGTGGAGGAGCTGTTCCGAGATGGGGTTAACTGGGGAAGGATCGTGGCCTTCTTTGAA 1249833 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||| ||||| ||||| ||| | | || | | || || |||| | Sbjct 1249834 TTCGGTGGCGTGATGTGCGTGGAGAGCGTTAATCGGGAGATGTCGCCTCTTGTGGACAGC 1249893 Query 3365 ATTGCCGCGTGGATGACAGACCAGCTGGGTGGAGAGGTTGGTTTGTGGATCCAAGAGAAC 3424 ||||| | ||||||||| || | ||| || | | | ||||||||||| ||| Sbjct 1249894 ATTGCTGTGTGGATGACCGAGTACCTGAACAGACACCTACATAACTGGATCCAAGACAAC 1249953 Query 3425 GGAGGATGG 3433 ||||| ||| Sbjct 1249954 GGAGGCTGG 1249962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414079782387580