Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03-
31] 78,595 sequences; 2,365,766,571 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq39 163 7e-35
seq78565 143 6e-29
seq2 93.3 1e-13
>seq39
Length=8077485
Score = 163 bits (180), Expect = 7e-35
Identities = 165/215 (77%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| |||||||| || |||||||| || |||||||| || || | ||||| | ||||||
Sbjct 4823391 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 4823450
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||||||||| || ||||| || | || |||||||| || | ||||| ||||||
Sbjct 4823451 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTCC 4823510
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || || || |||||| | |||||||| || ||||| |||
Sbjct 4823511 TGGATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCTAGGGTGATGGTC 4823570
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| || || || ||||| ||||| | |||||| ||
Sbjct 4823571 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 4823605
Score = 161 bits (178), Expect = 2e-34
Identities = 161/209 (77%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965
|||||||| || |||||||| || |||||||| || || | ||||| | |||||||||
Sbjct 4823166 ACAAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGTGCGGCCATCTTCC 4823225
Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025
||||||||||| || ||||| || | || |||||||| || | ||||| |||||||||
Sbjct 4823226 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGG 4823285
Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085
||||| || || || || || |||||| | |||||||| || ||||| |||||
Sbjct 4823286 ATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCTAGGGTGATGGTCTTG 4823345
Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || ||||| ||||| | ||||||
Sbjct 4823346 CCAGTCAGGGTCTTCACAAAGATCTGCAT 4823374
>seq78565
Length=14964121
Score = 143 bits (158), Expect = 6e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | ||| |||||||| ||||| |||||||| || || | ||||| | ||||||
Sbjct 6184418 AGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 6184359
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||| || || ||||| || | || ||||| ||||||| ||||| |||||
Sbjct 6184358 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCT 6184299
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||| || ||| || || || |||||||| | || ||||| || ||||| ||
Sbjct 6184298 TGGATTTTGGCTTTGACATTCTCAATGGTGTCGCTGGGCTCTACCTCTAGGGTGATGGTT 6184239
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| | || || ||||| | ||||||
Sbjct 6184238 TTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6184207
Score = 141 bits (156), Expect = 2e-28
Identities = 162/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | ||| |||||||| ||||| |||||||| || || | ||||| | ||||||
Sbjct 6183962 AGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 6183903
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||| || || ||||| || | || ||||| ||||||| ||||| |||||
Sbjct 6183902 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCT 6183843
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||| || || || || || |||||||| | || || || || ||||| ||
Sbjct 6183842 TGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCCAGGGTGATGGTT 6183783
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATG 211120
|| ||||| | || || ||||| | ||||||||| ||
Sbjct 6183782 TTGCCCGTCAAGGTTTTCACAAAGATCTGCATTTTCTG 6183745
Score = 140 bits (154), Expect = 8e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | ||| |||||||| ||||| |||||||| || || | ||||| | ||||||
Sbjct 6184190 AGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 6184131
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||| || || ||||| || | || ||||| ||||||| ||||| ||||||
Sbjct 6184130 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCC 6184071
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||| || || || || || |||||||| | || || || || ||||| ||
Sbjct 6184070 TGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATGGTT 6184011
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| | || || ||||| | ||||||
Sbjct 6184010 TTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6183979
>seq2
Length=68452538
Score = 93.3 bits (102), Expect = 1e-13
Identities = 92/119 (77%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 210984 ATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTT 211043
||||| | ||| || |||||||||| ||||||||| ||||||||||| ||||| |||
Sbjct 8820688 ATAAGTCATTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTCACATTT 8820629
Query 211044 TCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102
|| || || ||||| |||||||| || ||||| || || || || || ||||| ||
Sbjct 8820628 TCTATAGTATCAGAAGGCTCAACCTCAAGGGTGATGGTTTTCCCGGTCAGGGTCTTCAC 8820570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1157984735747175
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |