Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03-
31] 78,595 sequences; 2,365,766,571 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq78565 116 2e-21
seq39 98.7 7e-16
>seq78565
Length=14964121
Score = 116 bits (128), Expect = 2e-21
Identities = 148/201 (74%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
||||||||||| || || |||||| | ||||| ||||| ||||| || ||||| || ||
Sbjct 6183748 AAAATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTGGAAGTAGAGCCC 6183807
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| ||||| |||| ||| | || | ||||| ||||||||||| | || |||||
Sbjct 6183808 AGCGACACCATTGAGAATGTCAAGGC-CAAAATCCAAGACAAAGAAGGCATTCCTCCAGA 6183866
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
|| ||| | | || |||||||| || || |||||||| | ||||| | ||| ||
Sbjct 6183867 CCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTA 6183926
Query 23787 CAACATACAAAAAGAGTCCAC 23807
|||||| || ||||| |||||
Sbjct 6183927 CAACATCCAGAAAGAATCCAC 6183947
Score = 111 bits (122), Expect = 1e-19
Identities = 145/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || |||||| | ||||| ||||| ||||| || ||||| || |||
Sbjct 6183979 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGC 6184038
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | || | |||| | ||||||||||| | || ||||| ||
Sbjct 6184039 GACACCATTGAGAATGTCAAGGCCAAAA-TCCAGGACAAAGAAGGCATTCCTCCAGACCA 6184097
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || |||||||| || || |||||||| | ||||| | ||| |||||
Sbjct 6184098 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 6184157
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || ||||| |||||
Sbjct 6184158 CATCCAGAAAGAATCCAC 6184175
Score = 111 bits (122), Expect = 1e-19
Identities = 145/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || |||||| | ||||| ||||| ||||| || || || || |||
Sbjct 6184207 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAGGTAGAGCCCAGC 6184266
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | ||| | |||| | ||||||||||| | || ||||| ||
Sbjct 6184267 GACACCATTGAGAATGTCAAAGCCAAAA-TCCAAGACAAAGAAGGCATTCCTCCAGACCA 6184325
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || |||||||| || || |||||||| | ||||| | ||| |||||
Sbjct 6184326 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 6184385
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || ||||| |||||
Sbjct 6184386 CATCCAGAAAGAATCCAC 6184403
>seq39
Length=8077485
Score = 98.7 bits (108), Expect = 7e-16
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || ||||| || || || || ||||| || || ||||| |||
Sbjct 4823374 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTAGAGGTTGAGCCCAGT 4823315
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| |||| ||| | || | || | | ||||||||||| | || || || ||
Sbjct 4823314 GACACTATTGAGAATGTCAAGGCTAAGA-TCCAGGACAAAGAAGGCATCCCACCTGACCA 4823256
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || ||||| ||||| || |||||||| | ||||| || || |||||
Sbjct 4823255 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTATCTGACTACAA 4823196
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||||||
Sbjct 4823195 CATCCAGAAGGAGTCCAC 4823178
Score = 95.1 bits (104), Expect = 8e-15
Identities = 143/201 (71%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||| || || || ||||| || || || || ||||| || || ||||| ||
Sbjct 4823605 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTAGAGGTTGAGCCC 4823546
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| |||||| |||| ||| | || | || | | ||||||||||| | || || ||
Sbjct 4823545 AGTGACACTATTGAGAATGTCAAGGCTAAGA-TCCAGGACAAAGAAGGCATCCCACCTGA 4823487
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
|| ||| | | || ||||| ||||| || |||||||| | ||||| | || ||
Sbjct 4823486 CCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTA 4823427
Query 23787 CAACATACAAAAAGAGTCCAC 23807
|||||| || || ||||||||
Sbjct 4823426 CAACATCCAGAAGGAGTCCAC 4823406
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337685828526260
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |