Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq78565 152 1e-31 seq78595 123 6e-23 seq39 123 6e-23 seq2157 116 9e-21 >seq78565 Length=14964121 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | |||||| | ||| |||||||||||||| |||| ||||| |||| || || Sbjct 6183971 CGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTG 6183912 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||||||| |||||||| || || ||||| || | || ||||| || ||||| ||| Sbjct 6183911 CGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCT 6183852 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || ||||||||||| || ||| ||| || |||||||| || || || || | Sbjct 6183851 TCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCCAGG 6183792 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATG 225719 ||||| || ||||||||||| ||||| | || | |||||||| || Sbjct 6183791 GTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATTTTCTG 6183745 Score = 150 bits (166), Expect = 4e-31 Identities = 159/207 (77%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | |||||| | ||| |||||||||||||| |||| ||||| |||| || || Sbjct 6184427 CGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTG 6184368 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||||||| |||||||| || || ||||| || | || ||||| || ||||| ||| Sbjct 6184367 CGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCT 6184308 Query 225613 TCCTTGTCTTGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || ||||||||||| ||| |||| ||| || |||||||| || || || |||| Sbjct 6184307 TCTTTGTCTTGGAT-TTTGGCTTTGACATTCTCAATGGTGTCGCTGGGCTCTACCTCTAG 6184249 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| || ||||||||||| ||||| Sbjct 6184248 GGTGATGGTTTTGCCCGTCAAGGTTTT 6184222 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | |||||| | ||| |||||||||||||| |||| ||||| |||| || || Sbjct 6184199 CGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTG 6184140 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||||||| |||||||| || || ||||| || | || ||||| || ||||| ||| Sbjct 6184139 CGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCT 6184080 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || ||||| ||||| || ||| ||| || |||||||| || || || |||| Sbjct 6184079 TCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGG 6184020 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| || ||||||||||| ||||| Sbjct 6184019 GTGATGGTTTTGCCCGTCAAGGTTTT 6183994 >seq78595 Length=16875 Score = 123 bits (136), Expect = 6e-23 Identities = 128/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 7558 TACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTT 7617 ||||| ||||| |||| || ||||| || |||| |||||||| | ||||| || || Sbjct 5561 TACAATGTTATCGTTACAGCCCATGCTTTCATTATAATTTTCTTCATAGTTATACCAATT 5620 Query 7618 ATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCT 7677 || || || || || ||||||||| |||| || | || ||||| || || ||||| || Sbjct 5621 ATAATCGGTGGATTTGGAAATTGACTCGTACCAATGATAATTGGAGCACCAGATATAGCA 5680 Query 7678 TTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTA 7725 |||||| | | |||||||||||||||||| | |||| ||||| ||| Sbjct 5681 TTTCCACGTATAAACAATATAAGTTTTTGACTCTTACCCCCTTCATTA 5728 Score = 91.5 bits (100), Expect = 4e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||| || |||||||| ||||||||||| |||||||| ||||| || || ||||| | Sbjct 6131 ATACTTCGGGGTGACCAAAGAATCAGAATAAGTGTTGATATAGGATTGGGTCTCCTCCTC 6072 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 |||| || ||||| ||| | ||||| | |||| || ||||| Sbjct 6071 CTGAAGGGTCAAAGAAGGTTGTATTTAGGTTTCGGTCTGTTAA 6029 >seq39 Length=8077485 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||||||||| ||||| || || |||| ||||| || | || || | ||||| Sbjct 4823390 CAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 4823449 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || ||||| || || || ||||| ||||| Sbjct 4823450 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTC 4823509 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| || || ||||| || || || |||| ||||| || Sbjct 4823510 CTGGATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCTAGGGTGATGGT 4823569 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 4823570 CTTGCCAGTCA 4823580 Score = 116 bits (128), Expect = 9e-21 Identities = 138/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564 ||||||||||| ||||| || || |||| ||||| || | | || | |||||||| Sbjct 4823166 ACAAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGTGCGGCCATCTTCC 4823225 Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 |||||||| ||||| ||||| || | || ||||| || || || ||||| ||||| ||| Sbjct 4823226 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGG 4823285 Query 225625 ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTG 225684 ||||| ||| ||| || || ||||| || || || |||| ||||| |||||| Sbjct 4823286 ATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCTAGGGTGATGGTCTTG 4823345 Query 225685 CCCGTCA 225691 || |||| Sbjct 4823346 CCAGTCA 4823352 >seq2157 Length=16609 Score = 116 bits (128), Expect = 9e-21 Identities = 130/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| | ||||| ||||| | || || |||| || |||| |||||||| | ||||| Sbjct 10148 CAAATCTACAATGTTATCGTCACAGCCAATGCTTTCATTATAATTTTCTTCATAGTTATA 10089 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || || || || ||||||||| | || || ||||| ||||| || || ||| Sbjct 10088 CCAATTATAATTGGTGGATTTGGAAATTGACTTGTACCATTAATAATTGGAGCACCAGAT 10029 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTA 7725 || || |||||| | | ||||| |||||||||||| | |||| ||||| ||| Sbjct 10028 ATAGCATTTCCACGTATAAACAACATAAGTTTTTGACTTTTACCCCCTTCATTA 9975 Score = 91.5 bits (100), Expect = 4e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||| || |||||||| ||||||||||| |||||||| ||||| || || ||||| | Sbjct 9572 ATACTTCGGGGTGACCAAAGAATCAGAATAAGTGTTGATATAGGATTGGGTCTCCTCCTC 9631 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 |||| || ||||| ||| | ||||| | |||| || ||||| Sbjct 9632 CTGAAGGGTCAAAGAAGGTTGTATTTAGGTTTCGGTCTGTTAA 9674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191330322944930