Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq78549 100 2e-16 seq135 95.1 1e-14 >seq78549 Length=11360908 Score = 100 bits (110), Expect = 2e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 4808 TGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTAT 4867 ||| |||| ||| ||||| ||||| || || || |||||||| |||||||| ||||| || Sbjct 7631695 TGGATCTTTAATGTAAGTATCTATGAGCAGACTGTACATTTCTGAATGTATGTTTTCCAT 7631754 Query 4868 AGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 ||||||||| || || || || || | ||||||||||| || ||||| Sbjct 7631755 AGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTTACCTGTACTTC 7631802 >seq135 Length=2957239 Score = 95.1 bits (104), Expect = 1e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 4931 TACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990 ||| || ||||| ||||| || || || |||||||||||||| |||| |||||||| || Sbjct 2799784 TACCAAATTTTCATTTACAATTCCATCGCTGGCTGCAAAAAAAGCCAGGACATGAGAGAT 2799725 Query 4991 AAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 ||||| | ||| || | || || || |||||||| || || || || | ||||||||| Sbjct 2799724 GAAGTATTTTTCTTCTGATTTCAGCTTGTTCCAGTGAGGAAAGTCCTTTGATAAATCAAC 2799665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426640539197135