Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq78549 113 6e-20 seq135 98.7 1e-15 seq140 93.3 6e-14 >seq78549 Length=11360908 Score = 113 bits (124), Expect = 6e-20 Identities = 118/153 (77%), Gaps = 4/153 (3%) Strand=Plus/Plus Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTC---TTGAGACATAACTCC 47845 |||| |||||||||| |||| |||| ||| |||||| || ||||||||||| Sbjct 7626555 GTTCATTTAAAAGTCTGCATCCAAAGTGAAAGAGTTATCTGTGGATTTTGACATAACTCC 7626614 Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905 ||| || || ||||| || || || ||||| || || ||||| |||||||||| || || Sbjct 7626615 CATCTTCTGGTATTCTCCTACTCGCTTCTCAAAGAAGTTAGTCTTGCCTTCCAGCGAGAT 7626674 Query 47906 ATTTTCCATAAAATCAAATGGATTAACTGCATT 47938 ||| |||||||| ||||||||||| |||| || Sbjct 7626675 ATTCTCCATAAAGTCAAATGGATTCTCTGCTTT 7626707 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 |||||||| |||||||||||| | ||||| |||||||| || || || ||||| || || Sbjct 7631698 ATCTTTAATGTAAGTATCTATGAGCAGACTGTACATTTCTGAATGTATGTTTTCCATAGC 7631757 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 ||||| || || || ||||| | |||||||| | |||||| || Sbjct 7631758 AATCTGGAAGCCATAGAAACAGCGTGCTTCTGTTACCTGTACTTC 7631802 >seq135 Length=2957239 Score = 98.7 bits (108), Expect = 1e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 48639 ACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTG 48698 || ||||| |||||||| || || || | ||| ||||||||||| ||||||||||| | Sbjct 2796812 ACCTCTTCTGCTGTCCAGAAGGAAGCTTGTGCCTTTTTATACATGTTCCATATATCCGGG 2796753 Query 48699 TATTGGATTGGGAAAATAACAAATCTATTTGGATTTTTT 48737 ||||||| |||||| || ||||||||| ||||||||| Sbjct 2796752 TATTGGAGTGGGAAGATGACAAATCTACGAGGATTTTTT 2796714 >seq140 Length=3053534 Score = 93.3 bits (102), Expect = 6e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||| || || || | || || || ||||| || |||||||| || ||||| | || Sbjct 10867 TGAAACTCGCCCGAGAGGACCCTGCGTGTGTAGATGTTACTGGTGTAGGGTTCAATGGAC 10926 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGG 77230 |||||||| ||||| || ||||||||||||||||||||||| || Sbjct 10927 TCATTGTTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATTGG 10970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693986331320800