Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq78549 118 2e-21 seq135 93.3 6e-14 >seq78549 Length=11360908 Score = 118 bits (130), Expect = 2e-21 Identities = 110/139 (79%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 46283 TTTAAAAGTCGACATCTAAAGAAAAATGATTATCTTC---TTGTGACATAACTCCCATTT 46339 |||||||||| |||| |||| ||| |||||| || ||||||||||||||| | Sbjct 7626560 TTTAAAAGTCTGCATCCAAAGTGAAAGAGTTATCTGTGGATTTTGACATAACTCCCATCT 7626619 Query 46340 TTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 46399 | |||||||| ||||| || ||||| || || ||||| |||||||||| || ||||| | Sbjct 7626620 TCTGGTATTCTCCTACTCGCTTCTCAAAGAAGTTAGTCTTGCCTTCCAGCGAGATATTCT 7626679 Query 46400 CCATAAAATCAAACGGATT 46418 ||||||| ||||| ||||| Sbjct 7626680 CCATAAAGTCAAATGGATT 7626698 Score = 102 bits (112), Expect = 1e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||||| || |||||||| | ||||| |||||||||||||| |||||||| ||||| Sbjct 7631698 ATCTTTAATGTAAGTATCTATGAGCAGACTGTACATTTCTGAATGTATGTTTTCCATAGC 7631757 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 ||||| || || || ||||| | |||||| || | |||||| ||| Sbjct 7631758 AATCTGGAAGCCATAGAAACAGCGTGCTTCTGTTACCTGTACTTCT 7631803 >seq135 Length=2957239 Score = 93.3 bits (102), Expect = 6e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 47128 ACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGA 47187 || ||||| ||||||||||| || || | ||| ||||||||||| ||||||||||| | Sbjct 2796812 ACCTCTTCTGCTGTCCAGAAGGAAGCTTGTGCCTTTTTATACATGTTCCATATATCCGGG 2796753 Query 47188 TATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTT 47226 ||||||| || || || ||||||||| ||||||||| Sbjct 2796752 TATTGGAGTGGGAAGATGACAAATCTACGAGGATTTTTT 2796714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712233986510400