Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03-
31] 78,595 sequences; 2,365,766,571 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq78549 118 2e-21
seq135 93.3 6e-14
>seq78549
Length=11360908
Score = 118 bits (130), Expect = 2e-21
Identities = 110/139 (79%), Gaps = 3/139 (2%)
Strand=Plus/Plus
Query 46283 TTTAAAAGTCGACATCTAAAGAAAAATGATTATCTTC---TTGTGACATAACTCCCATTT 46339
|||||||||| |||| |||| ||| |||||| || ||||||||||||||| |
Sbjct 7626560 TTTAAAAGTCTGCATCCAAAGTGAAAGAGTTATCTGTGGATTTTGACATAACTCCCATCT 7626619
Query 46340 TTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 46399
| |||||||| ||||| || ||||| || || ||||| |||||||||| || ||||| |
Sbjct 7626620 TCTGGTATTCTCCTACTCGCTTCTCAAAGAAGTTAGTCTTGCCTTCCAGCGAGATATTCT 7626679
Query 46400 CCATAAAATCAAACGGATT 46418
||||||| ||||| |||||
Sbjct 7626680 CCATAAAGTCAAATGGATT 7626698
Score = 102 bits (112), Expect = 1e-16
Identities = 86/106 (81%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949
|||||||| || |||||||| | ||||| |||||||||||||| |||||||| |||||
Sbjct 7631698 ATCTTTAATGTAAGTATCTATGAGCAGACTGTACATTTCTGAATGTATGTTTTCCATAGC 7631757
Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995
||||| || || || ||||| | |||||| || | |||||| |||
Sbjct 7631758 AATCTGGAAGCCATAGAAACAGCGTGCTTCTGTTACCTGTACTTCT 7631803
>seq135
Length=2957239
Score = 93.3 bits (102), Expect = 6e-14
Identities = 80/99 (81%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 47128 ACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGA 47187
|| ||||| ||||||||||| || || | ||| ||||||||||| ||||||||||| |
Sbjct 2796812 ACCTCTTCTGCTGTCCAGAAGGAAGCTTGTGCCTTTTTATACATGTTCCATATATCCGGG 2796753
Query 47188 TATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTT 47226
||||||| || || || ||||||||| |||||||||
Sbjct 2796752 TATTGGAGTGGGAAGATGACAAATCTACGAGGATTTTTT 2796714
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712233986510400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |