Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq78565 143 6e-29 seq39 109 1e-18 >seq78565 Length=14964121 Score = 143 bits (158), Expect = 6e-29 Identities = 163/217 (75%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | || ||||| || ||||| ||||||||||| |||| | || | ||||||| Sbjct 6183962 AGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 6183903 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||| ||||| |||||||||||||| | | || ||||| || | Sbjct 6183902 TCCAGCTGCTTT--CCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGT 6183845 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 |||| ||||| |||||| |||| | | |||| ||||||||| || || || | Sbjct 6183844 CTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCCAGGGTGATGG 6183785 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 |||||||||| | || ||||| |||| ||||||||| Sbjct 6183784 TTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATTTT 6183748 Score = 138 bits (152), Expect = 3e-27 Identities = 160/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | || ||||| || ||||| ||||||||||| |||| | || | ||||||| Sbjct 6184418 AGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 6184359 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||| ||||| |||||||||||||| | | || ||||| || | Sbjct 6184358 TCCAGCTGCTTT--CCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGT 6184301 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 |||| ||||| ||||||| |||| | | |||| |||||| || || || || | Sbjct 6184300 CTTGGATTTTGGCTTTGACATTCTCAATGGTGTCGCTGGGCTCTACCTCTAGGGTGATGG 6184241 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||||| | || ||||| |||| |||||| Sbjct 6184240 TTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6184207 Score = 132 bits (146), Expect = 1e-25 Identities = 159/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | || ||||| || ||||| ||||||||||| |||| | || | ||||||| Sbjct 6184190 AGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 6184131 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||| ||||| |||||||||||||| | | || ||||| || | Sbjct 6184130 TCCAGCTGCTTT--CCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGT 6184073 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || ||||| |||||| |||| | | |||| ||||||||| || || || | Sbjct 6184072 CCTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATGG 6184013 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||||| | || ||||| |||| |||||| Sbjct 6184012 TTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6183979 >seq39 Length=8077485 Score = 109 bits (120), Expect = 1e-18 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 ||||| || || || ||||| || ||||||||||| || | || || | |||||||| Sbjct 4823166 ACAAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGTGCGGCCATCTTCC 4823225 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || || || || ||||| |||||||||||||| | | ||| ||||| || || || Sbjct 4823226 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGG 4823285 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTT 152072 || || |||||| |||| | |||| ||| ||| || || || || || || Sbjct 4823286 ATCTTAGCCTTGACATTCTCAATAGTGTC---ACTGGGCTCAACCTCTAGGGTGATGGTC 4823342 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || |||||||| |||| |||||| Sbjct 4823343 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4823374 Score = 105 bits (116), Expect = 2e-17 Identities = 155/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || || || ||||| || ||||||||||| || | | || | |||||| Sbjct 4823391 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 4823450 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | ||| ||||| || || Sbjct 4823451 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTCC 4823510 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| |||| | |||| ||| ||| || || || || || Sbjct 4823511 TGGATCTTAGCCTTGACATTCTCAATAGTGTC---ACTGGGCTCAACCTCTAGGGTGATG 4823567 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || |||||||| |||| |||||| || Sbjct 4823568 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 4823605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152658904257245