Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03-
31] 78,595 sequences; 2,365,766,571 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq78565 152 1e-31
seq39 132 1e-25
seq78529 98.7 2e-15
seq2285 93.3 9e-14
seq76458 89.7 1e-12
seq32725 89.7 1e-12
seq156 89.7 1e-12
seq925 86.0 1e-11
seq16958 84.2 5e-11
seq1106 84.2 5e-11
>seq78565
Length=14964121
Score = 152 bits (168), Expect = 1e-31
Identities = 181/244 (74%), Gaps = 1/244 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| || ||||| || |||| || | ||| |||||| |||||||||||||| |
Sbjct 6183978 ACCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGA 6183919
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| ||||| ||||| || || || || ||||||||||||| | || ||||| ||
Sbjct 6183918 CAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGG 6183859
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| || || ||||||||||| || || || || | || || ||||| | || ||
Sbjct 6183858 AATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTAC 6183799
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCATATACAA 283111
||| || ||||| || || |||||||| || || || || |||||||||||| | |||||
Sbjct 6183798 TTCCAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATTTTC-TGTACAA 6183740
Query 283112 ATAT 283115
| ||
Sbjct 6183739 AAAT 6183736
Score = 136 bits (150), Expect = 8e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| || ||||| || |||| || | ||| |||||| |||||||||||||| |
Sbjct 6184206 ACCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGA 6184147
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| ||||| ||||| || || || || ||||||||||||| | || ||||| ||
Sbjct 6184146 CAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGG 6184087
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| || || ||||| ||||| || || || || | || || ||||| | || ||
Sbjct 6184086 AATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTAC 6184027
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||| || ||||| || || |||||||| || || || || ||||||||
Sbjct 6184026 TTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6183979
Score = 134 bits (148), Expect = 3e-26
Identities = 164/224 (73%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 282876 CCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGC 282935
|| || ||||| || |||| || | ||| |||||| |||||||||||||| | ||
Sbjct 6184430 CCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGG 6184371
Query 282936 GTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATA 282995
||||| ||||| || || || || ||||||||||||| | || ||||| |||||
Sbjct 6184370 GTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATG 6184311
Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055
|| || ||||||||||| || ||||| || | || || ||||| | || || ||
Sbjct 6184310 CCTTCTTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCGCTGGGCTCTACCTCT 6184251
Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| ||||| || || |||||||| || || || || ||||||||
Sbjct 6184250 AGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6184207
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 6172449 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 6172507
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 6176808 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 6176866
>seq39
Length=8077485
Score = 132 bits (146), Expect = 1e-25
Identities = 168/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| | ||| || || || || || | ||| || || ||||||||||||||||
Sbjct 4823375 ACCACCTCTCAGACGCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 4823434
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| ||||||||||| || || || || || |||||||||| | || |||||| ||
Sbjct 4823435 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGG 4823494
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| || || ||||| |||||||| || || || | || |||||||| | || ||
Sbjct 4823495 GATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCAAC 4823554
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
|| || ||||| ||||| || |||| ||||| || || |||||||| ||
Sbjct 4823555 CTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 4823605
Score = 131 bits (144), Expect = 4e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| | ||| || | || || || | |||| || || ||||||||||||||||
Sbjct 4823148 CCACCCCTCAGACGCAACACAAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGAT 4823207
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| ||||||||||| || || || || || |||||||||| | || |||||| ||
Sbjct 4823208 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGG 4823267
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| || || ||||| |||||||| || || || | || |||||||| | || ||
Sbjct 4823268 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCAACC 4823327
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || ||||| ||||| || |||| ||||| || || ||||||||
Sbjct 4823328 TCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4823374
>seq78529
Length=6346059
Score = 98.7 bits (108), Expect = 2e-15
Identities = 57/59 (97%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 3554635 TTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 3554693
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 1850327 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 1850385
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 3554944 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 3554886
>seq2285
Length=18801
Score = 93.3 bits (102), Expect = 9e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 18708 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCAGGAGACCGGGGTTCGATTCCCCGA 18650
>seq76458
Length=506
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 121 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 179
>seq32725
Length=905
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 385 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 327
>seq156
Length=2469232
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||| |||||||||||||||| |||||||||
Sbjct 2368996 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACACAGGAGACCGGGGTTCGATTCCCCGA 2369054
>seq925
Length=74835
Score = 86.0 bits (94), Expect = 1e-11
Identities = 55/60 (92%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 168752 ATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
|||||||||||||| |||||||||||||||||||||| ||||||||||| |||||| ||
Sbjct 59157 ATTAGTATAGTGGTGAGTATCCCTGCCTGTCACGCAGAAGACCGGGGTTTGATTCCCTGA 59216
Score = 84.2 bits (92), Expect = 5e-11
Identities = 54/59 (92%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| |||||||| || |||||||||||||| |||||||||
Sbjct 60686 TTAGTATAGTGGTGAGTATCCCCGCCTGTCAAGCGGGAGACCGGGGTTCGATTCCCCGA 60744
>seq16958
Length=887
Score = 84.2 bits (92), Expect = 5e-11
Identities = 54/59 (92%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| ||||||||||||||||||| ||||||| |||||| |||||||||
Sbjct 196 TTAGTATAGTGGTGAGTATCCCTGCCTGTCACGTGGGAGACCAGGGTTCGATTCCCCGA 254
>seq1106
Length=51910
Score = 84.2 bits (92), Expect = 5e-11
Identities = 54/59 (92%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| ||||||||||||||||||| ||||||| |||||| |||||||||
Sbjct 4588 TTAGTATAGTGGTGAGTATCCCTGCCTGTCACGTGGGAGACCAGGGTTCGATTCCCCGA 4530
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1045685135261130
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |