Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03-
31] 78,595 sequences; 2,365,766,571 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq800 138 2e-27
seq45 134 2e-26
>seq800
Length=84292
Score = 138 bits (152), Expect = 2e-27
Identities = 213/303 (70%), Gaps = 1/303 (0%)
Strand=Plus/Minus
Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362
||||| ||||| ||||| | |||| || ||| | | || | |||| || |
Sbjct 67531 GGACAGCCCTTCACGTTATTGCAGATGAGCTTCTGTAGGGAGGCAGTATTGATTATTTCA 67472
Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422
|| ||||| | |||||| |||||||| || ||||||||| | || || ||||| | ||
Sbjct 67471 AAGCCCACTTTTCCGCCAAAGGTGCTTGGTTTCCAGTACTCTGGAGAACAGATAGCATTT 67412
Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482
|||| || ||||| | ||||| || || || | || | ||| ||||||| ||||||
Sbjct 67411 CCCATCAGCCCTTTCAAAGAGAATGGTGCTCCAAGTTCCACCATGGTCTCACCAAAGATG 67352
Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542
|| ||||| ||| |||| || | | || | ||||||||||| ||| || | ||||
Sbjct 67351 GCACCAGGACGAGGCCTTTCTACTAGAAGGCCAGGGTACAGCTCCATAGCATCAATGTCT 67292
Query 8543 CCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT-TTTATTAATAAAAAA 8601
|| ||||| | | ||| || || || || ||||||||||| | |||| ||| |||
Sbjct 67291 CCATAAAGCTCTTCTAATTCAGCTGCCATTTCTTTTTCTCCTGTAATAATTATTAATAAA 67232
Query 8602 TAA 8604
|||
Sbjct 67231 TAA 67229
Score = 125 bits (138), Expect = 1e-23
Identities = 173/242 (71%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303
||||| | || || ||||| || ||||| ||| ||||||||||||| | || || ||
Sbjct 64323 ATGAGCCTGGTAGTTTGGAAAAGCTGCTCATCATTCCATTCTGGATGCACCTGCTTAAGG 64264
Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363
| || || |||| |||||||| |||||||| || ||||| |||||||| | || ||
Sbjct 64263 ATGTCACAGACCCGATTGTGTTCTCTGAGCCATATTGTGGCATACATCATTAAACCTGGG 64204
Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423
|||| ||||| |||| | || |||| | ||| || | || || | || ||
Sbjct 64203 ACCAAACCAAACACCTCATTGCCTACAGAAAATTGCAGGTGCTTAGGAACATGAGGTGGG 64144
Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483
|||||||| | |||| ||| || || | ||| || |||||||| || |||||||||
Sbjct 64143 TAGATCATTTCTGCCTGAGTGTCCTTCACAGTGGGAGGGTACATTTCTCCATCAATCATC 64084
Query 9484 TG 9485
||
Sbjct 64083 TG 64082
Score = 98.7 bits (108), Expect = 1e-15
Identities = 138/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 9646 TGTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCT 9705
|| |||||||||||| || || |||| |||||||| || ||| ||| ||| |
Sbjct 62904 TGATCTTACCCCATGGCCGAGAGCTTTGGTGAAGGCTGGCCCTTTGTGGTGATCTGTCTT 62845
Query 9706 AAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGG 9765
||| |||||||| ||||||||||| |||| || | ||||| | || ||||| || ||
Sbjct 62844 AAAGAACTGGTGGGTGAAATGTTGAGCAAAGAACGTGAACATCATATTTGTGCCTTGAGG 62785
Query 9766 ATCGGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAG 9825
||| ||| | || | ||| || ||| ||| |||||||| ||| | ||| || ||
Sbjct 62784 ATCAGGAATAAATTTTTTCCTCAGCAGAAATTTCTCCACAACTACTGCAGAATCTGGGAG 62725
Query 9826 CTTTGTTTTACCTG 9839
|| | |||||||
Sbjct 62724 CTCCTTCTTACCTG 62711
>seq45
Length=7072151
Score = 134 bits (148), Expect = 2e-26
Identities = 173/235 (74%), Gaps = 4/235 (2%)
Strand=Plus/Plus
Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291
|| ||||| | |||||| || | |||||||| || |||||||| ||||| |||||
Sbjct 4006970 TCACCGATGAGGATGAGGCGGGCTGTCTGGAAGAGCTGCTCGTCGCTCCACGTCGGATGC 4007029
Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351
|| || ||||| || || || || | |||||| || | |||||||| || || ||||||
Sbjct 4007030 TCCTGCTTCAGCACGTCACAGACTCGGTTGTGCTCGCGAAGCCAGATGGTCGCATACATC 4007089
Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411
|| ||||| || | ||||||||| |||| || || |||||||| || | | | |||
Sbjct 4007090 ATTAGCCCCGGCAGCAGGCCAAACACCTCCTGGCCCACAGCCAGCTGCTTCTCCTTGGGG 4007149
Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTT--TGACCGAGGGGGGATA 9464
||| ||| ||||||||||| ||| ||| | ||| ||||| ||| |||||
Sbjct 4007150 GTGCCGGCAGGGTAGATCATGTGAACC-GGA-GCCTTGAGGACCGTGGGTGGATA 4007202
Score = 95.1 bits (104), Expect = 2e-14
Identities = 193/285 (68%), Gaps = 4/285 (1%)
Strand=Plus/Plus
Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362
||||||| |||||||||| ||| || || ||| | | || | || || ||| |
Sbjct 4002363 GGACACCGCTTGACGTTGAGACACACGAGCTTCTGGAGCGAAGCTGTTTTCACAATCTCA 4002422
Query 8363 AACCCCACGTCT--CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGT 8420
|| || ||| || || || ||||||||||||||||| ||||||||||||| ||
Sbjct 4002423 AAGCCA--GTCGAGCCACCAAAAGTGCTGGGCTTCCAGTATTCCGGGGAGCAGATCGGGT 4002480
Query 8421 TCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGA 8480
| | | || ||||| ||||| ||||| || || | ||| | |||||||| || || |
Sbjct 4002481 TTCCGAAAAGCCCTTTCAGGGAAAACGGGGCTCCAATCTCCACCATGCTCTCCCCAAAAA 4002540
Query 8481 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGT 8540
| | ||| || | || || | ||| || || | || | ||||| || | | ||
Sbjct 4002541 TAGAGTTTATCTGGCGTTTCTCAAGCAACAAACCAGGATAAAACTCCAAGGCATTAATGT 4002600
Query 8541 CTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585
|||| || || | || || || || |||||| ||||||||
Sbjct 4002601 CTCCATATAGCTCTTCCAGCTCCGCTGCTTTCTCCTCTTCTCCTG 4002645
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716172513348800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |