Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03-
31] 78,595 sequences; 2,365,766,571 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq78565 152 1e-31
seq39 131 4e-25
>seq78565
Length=14964121
Score = 152 bits (168), Expect = 1e-31
Identities = 160/207 (77%), Gaps = 5/207 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || || |||||||| | || || ||||| |||||||| ||||| || || |||
Sbjct 6184210 CAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAGGTAGA--GCCCAGCG 6184267
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| ||||| |||||| || || || ||||||||||| || ||||| |||||||
Sbjct 6184268 ACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAGC 6184327
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| |||||||| ||||| |||||||| | || || |||| || |||
Sbjct 6184328 AGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACA 6184387
Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128
|||| |||||||| || ||||| ||||
Sbjct 6184388 TCCAGAAAGAATCCACTCTGCA-CTTG 6184413
Score = 149 bits (164), Expect = 2e-30
Identities = 159/207 (77%), Gaps = 5/207 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || || |||||||| | || || ||||| |||||||| || || || || |||
Sbjct 6183982 CAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGA--GCCCAGCG 6184039
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| ||||| ||||| || || |||||||||||||| || ||||| |||||||
Sbjct 6184040 ACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGACCAGC 6184099
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| |||||||| ||||| |||||||| | || || |||| || |||
Sbjct 6184100 AGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACA 6184159
Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128
|||| |||||||| || ||||| ||||
Sbjct 6184160 TCCAGAAAGAATCCACTCTGCA-CTTG 6184185
Score = 145 bits (160), Expect = 2e-29
Identities = 164/216 (76%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| | || || |||||||| | || || ||||| |||||||| || || ||
Sbjct 6183748 AAAATGC---AGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTGGAAGTAGA- 6183803
Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032
|| ||| ||||||| ||||| ||||| || || || ||||||||||| || ||||
Sbjct 6183804 -GCCCAGCGACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTC 6183862
Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092
| |||||||| | || ||||| |||||||| ||||| |||||||| | || || |||
Sbjct 6183863 CAGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCG 6183922
Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128
| || ||| |||| |||||||| || ||||| ||||
Sbjct 6183923 ACTACAACATCCAGAAAGAATCCACTCTGCA-CTTG 6183957
>seq39
Length=8077485
Score = 131 bits (144), Expect = 4e-25
Identities = 162/220 (74%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || || ||||| || || || || || || |||||||| ||||| || || |||
Sbjct 4823371 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTAGAGGTTGA--GCCCAGTG 4823314
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|||| || ||||| ||||| ||||| |||||||||||||| ||||| || |||||||
Sbjct 4823313 ACACTATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATCCCACCTGACCAGC 4823254
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| || || || ||||| |||||||| | || || | || || |||
Sbjct 4823253 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTATCTGACTACAACA 4823194
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141
|||| || || || || || || ||||| ||| | || ||
Sbjct 4823193 TCCAGAAGGAGTCCACGCTCCACCTTGTGTTGCGTCTGAG 4823154
Score = 127 bits (140), Expect = 5e-24
Identities = 162/221 (73%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || || ||||| || || || || || || |||||||| ||||| || || |||
Sbjct 4823599 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTAGAGGTTGA--GCCCAGTG 4823542
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|||| || ||||| ||||| ||||| |||||||||||||| ||||| || |||||||
Sbjct 4823541 ACACTATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATCCCACCTGACCAGC 4823482
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| || || || ||||| |||||||| | || || | || || |||
Sbjct 4823481 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACA 4823422
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| || || || || || || ||||| || | || |||
Sbjct 4823421 TCCAGAAGGAGTCCACCCTCCACCTTGTGCTGCGTCTGAGA 4823381
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1202519044562430
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |