Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq78565 152 1e-31 seq39 131 4e-25 >seq78565 Length=14964121 Score = 152 bits (168), Expect = 1e-31 Identities = 160/207 (77%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| | || || ||||| |||||||| ||||| || || ||| Sbjct 6184210 CAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAGGTAGA--GCCCAGCG 6184267 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| |||||| || || || ||||||||||| || ||||| ||||||| Sbjct 6184268 ACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAGC 6184327 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| |||||||| ||||| |||||||| | || || |||| || ||| Sbjct 6184328 AGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACA 6184387 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| |||||||| || ||||| |||| Sbjct 6184388 TCCAGAAAGAATCCACTCTGCA-CTTG 6184413 Score = 149 bits (164), Expect = 2e-30 Identities = 159/207 (77%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| | || || ||||| |||||||| || || || || ||| Sbjct 6183982 CAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGA--GCCCAGCG 6184039 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| || || |||||||||||||| || ||||| ||||||| Sbjct 6184040 ACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGACCAGC 6184099 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| |||||||| ||||| |||||||| | || || |||| || ||| Sbjct 6184100 AGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACA 6184159 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| |||||||| || ||||| |||| Sbjct 6184160 TCCAGAAAGAATCCACTCTGCA-CTTG 6184185 Score = 145 bits (160), Expect = 2e-29 Identities = 164/216 (76%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || |||||||| | || || ||||| |||||||| || || || Sbjct 6183748 AAAATGC---AGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTGGAAGTAGA- 6183803 Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || ||| ||||||| ||||| ||||| || || || ||||||||||| || |||| Sbjct 6183804 -GCCCAGCGACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTC 6183862 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | |||||||| | || ||||| |||||||| ||||| |||||||| | || || ||| Sbjct 6183863 CAGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCG 6183922 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 | || ||| |||| |||||||| || ||||| |||| Sbjct 6183923 ACTACAACATCCAGAAAGAATCCACTCTGCA-CTTG 6183957 >seq39 Length=8077485 Score = 131 bits (144), Expect = 4e-25 Identities = 162/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| ||||| || || ||| Sbjct 4823371 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTAGAGGTTGA--GCCCAGTG 4823314 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || ||||| ||||| ||||| |||||||||||||| ||||| || ||||||| Sbjct 4823313 ACACTATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATCCCACCTGACCAGC 4823254 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 4823253 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTATCTGACTACAACA 4823194 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || || || || || || ||||| ||| | || || Sbjct 4823193 TCCAGAAGGAGTCCACGCTCCACCTTGTGTTGCGTCTGAG 4823154 Score = 127 bits (140), Expect = 5e-24 Identities = 162/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| ||||| || || ||| Sbjct 4823599 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTAGAGGTTGA--GCCCAGTG 4823542 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || ||||| ||||| ||||| |||||||||||||| ||||| || ||||||| Sbjct 4823541 ACACTATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATCCCACCTGACCAGC 4823482 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 4823481 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACA 4823422 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || || || ||||| || | || ||| Sbjct 4823421 TCCAGAAGGAGTCCACCCTCCACCTTGTGCTGCGTCTGAGA 4823381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202519044562430