Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq33 91.5 2e-13 seq1 84.2 2e-11 >seq33 Length=109106476 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| ||||| ||||| || || |||||||| || | || ||||| ||||| ||||| Sbjct 25982267 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 25982326 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | |||||||| || | || || || ||||||||||| || || || || | |||||| | Sbjct 25982327 TCAACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 25982386 Query 17106 CGATTAATCGTTC 17118 | | || ||||| Sbjct 25982387 CTACTACACGTTC 25982399 >seq1 Length=270692262 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 16959 TCAGA-CATGCGAAAT-CGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAA 17016 ||||| |||| | ||| | | ||||| | ||||||||||||| || || || || || || Sbjct 235935838 TCAGAACATGTGTAATGCTCTATGTATTACCTCGTCTCTGCTAATGAGCTCATTGGAGAA 235935897 Query 17017 TGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGA 17076 |||| || |||||| |||| ||||| | ||||||||| || || || || || || Sbjct 235935898 AGTCAGTCCAGGCATCAGGCCTCTCTTCTTCAGCCAAAATATGGCAGCAAAAGATCCTGA 235935957 Query 17077 AAAGAATATACCCTCGACGGATGCAAACGC 17106 ||||| || || || || | ||||| || Sbjct 235935958 GAAGAAAATTCCTTCCACTGCAGCAAAGGC 235935987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545147147600