Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq24 107 1e-18 seq1 105 5e-18 >seq24 Length=75875076 Score = 107 bits (118), Expect = 1e-18 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 4294 AGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATT 4353 ||||| ||||||| || | |||||||| |||||||||| || |||||||||||||| Sbjct 52419791 AGTTCTCTGCTGAGCACTATGTTAATTCTATCTTTTAAAGGACGATTCTTCTCAGGAATA 52419850 Query 4354 GAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTGG 4400 |||||||| ||||| |||||||| |||| | ||| |||||| |||| Sbjct 52419851 GAGAACCAGGTCTTCTTACCCATTATCAACACATTTTGTTTACCTGG 52419897 >seq1 Length=270692262 Score = 105 bits (116), Expect = 5e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 ||| |||||||||||| ||||| |||||||| || ||||| |||||||| | ||| |||| Sbjct 186510467 CTTGATATTCTGCTCCAAAATGTCTCCACTGGAAACCATAAACAGGTCCTAAATCCCCTT 186510526 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||||| | ||||| ||||||| || || | |||||||| |||||||||| Sbjct 186510527 CCACTCTGTGAGTGAAACCTTGTTTATCCAAGAACTCACGTGATCCATTGGCATCCCAAA 186510586 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTT 102180 | | || || ||| || ||||| || Sbjct 186510587 TCTTGACTCCCTTTGCAGAGAGCTCGTT 186510614 Score = 104 bits (114), Expect = 2e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 101753 GTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCT 101812 || |||||||||||||| | || | || ||||| || ||||| || || ||||||||| Sbjct 186506143 GTCACATGAGCAATCATATACGTGAGCAGTGAATAACTGGCAATATTGAAAGGCACTCCT 186506202 Query 101813 AACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCA-TCACAGACATA 101871 | |||||||| | ||||| |||||||| || || ||||||| ||| | ||| ||||| Sbjct 186506203 AGTCCCATATCTCCAGATCTCTGATACAGCTGGCAAGAAAGCTCGCCATTTACA-ACATA 186506261 Query 101872 AAATTGACTTAATACATGACAAGGCGGCAACACCAT 101907 ||||| | | |||||||||| || || |||| Sbjct 186506262 GAATTGGCAGAGAGCATGACAAGGGGGTAAAGCCAT 186506297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361250891807570