Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13]
70 sequences; 2,049,536,252 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq24 107 1e-18
seq1 105 5e-18
>seq24
Length=75875076
Score = 107 bits (118), Expect = 1e-18
Identities = 88/107 (82%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 4294 AGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATT 4353
||||| ||||||| || | |||||||| |||||||||| || ||||||||||||||
Sbjct 52419791 AGTTCTCTGCTGAGCACTATGTTAATTCTATCTTTTAAAGGACGATTCTTCTCAGGAATA 52419850
Query 4354 GAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTGG 4400
|||||||| ||||| |||||||| |||| | ||| |||||| ||||
Sbjct 52419851 GAGAACCAGGTCTTCTTACCCATTATCAACACATTTTGTTTACCTGG 52419897
>seq1
Length=270692262
Score = 105 bits (116), Expect = 5e-18
Identities = 112/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092
||| |||||||||||| ||||| |||||||| || ||||| |||||||| | ||| ||||
Sbjct 186510467 CTTGATATTCTGCTCCAAAATGTCTCCACTGGAAACCATAAACAGGTCCTAAATCCCCTT 186510526
Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152
| |||||| | ||||| ||||||| || || | |||||||| ||||||||||
Sbjct 186510527 CCACTCTGTGAGTGAAACCTTGTTTATCCAAGAACTCACGTGATCCATTGGCATCCCAAA 186510586
Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTT 102180
| | || || ||| || ||||| ||
Sbjct 186510587 TCTTGACTCCCTTTGCAGAGAGCTCGTT 186510614
Score = 104 bits (114), Expect = 2e-17
Identities = 118/156 (76%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 101753 GTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCT 101812
|| |||||||||||||| | || | || ||||| || ||||| || || |||||||||
Sbjct 186506143 GTCACATGAGCAATCATATACGTGAGCAGTGAATAACTGGCAATATTGAAAGGCACTCCT 186506202
Query 101813 AACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCA-TCACAGACATA 101871
| |||||||| | ||||| |||||||| || || ||||||| ||| | ||| |||||
Sbjct 186506203 AGTCCCATATCTCCAGATCTCTGATACAGCTGGCAAGAAAGCTCGCCATTTACA-ACATA 186506261
Query 101872 AAATTGACTTAATACATGACAAGGCGGCAACACCAT 101907
||||| | | |||||||||| || || ||||
Sbjct 186506262 GAATTGGCAGAGAGCATGACAAGGGGGTAAAGCCAT 186506297
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361250891807570
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |