Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1 129 7e-25 seq33 105 8e-18 seq21 89.7 6e-13 >seq1 Length=270692262 Score = 129 bits (142), Expect = 7e-25 Identities = 126/161 (78%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 24133 AACATGCGAAAT-CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 24191 |||||| | ||| | | |||| |||||||||| ||||| | || ||||| || || Sbjct 235935842 AACATGTGTAATGCTCTATGTATTACCTCGTCTCTGCTAATGAGCTCATTGGAGAAAGTC 235935901 Query 24192 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAG 24251 ||||| ||||| ||||| | ||| || ||||||||||||| ||||| ||||| || ||| Sbjct 235935902 AGTCCAGGCATCAGGCCTCTCTTCTTCAGCCAAAATATGGCAGCAAAAGATCCTGAGAAG 235935961 Query 24252 AAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCC 24292 ||||||||||| ||||| |||||||||| | ||| || || Sbjct 235935962 AAAATTCCTTCCACTGCAGCAAAGGCAACCACTCTCTCCCC 235936002 >seq33 Length=109106476 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| |||||||| || | || || ||||| |||||||| ||||||| || | || | Sbjct 25982267 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 25982326 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | |||||| ||||| ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 25982327 TCAACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 25982386 Query 24277 C 24277 | Sbjct 25982387 C 25982387 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||| | || || || || | ||||| |||||||| |||||||||||||| ||||| Sbjct 25985348 ATCTTTTATGTAAGTGTCTATAAGCAGACTGTACATTTCTGAATGAATGTTTTCCATGGC 25985407 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 || || || || || ||||| | ||| || || ||||| |||||| Sbjct 25985408 AATCTGGAAGCCATAAAAACAGCGAGCTTCTGTGATCTGCACTTCT 25985453 >seq21 Length=203625132 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||| ||||| || | |||| || ||||| || ||||||||||| || || | Sbjct 200389014 ACCTGAAACTCTCCTGAGAGGACTCGGCGTGTGTAGATGTTACTGGTATAGGGCTCGATG 200389073 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 || |||||||| |||||||| ||||| || || ||||| ||||| || | | | || Sbjct 200389074 GATTCATTATTGCCCAAAATCTGAGCCGTGGAAGCAGTTGGCATTGGAGAAAGGAGCAAG 200389133 Query 53270 CTATTTCTAAGACCGTA 53286 || || |||| |||||| Sbjct 200389134 CTGTTCCTAACACCGTA 200389150 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 54088 || |||||||| ||||||||||||||||| || || | || || || || | || || Sbjct 200398399 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTAGCTCGCTGC 200398458 Query 54089 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 54148 ||||| || || || ||||| || | ||| || ||| | | ||||| | |||||||| Sbjct 200398459 TCCTCCTTCCCGGTGTTCTTCTTCAAATCCAGAAACTCAAAGATATCCAAGTGCCACGGC 200398518 Query 54149 TCCAAGTATATGGTCATAACTCCAGG 54174 |||| ||| |||| | | | ||||| Sbjct 200398519 TCCAGGTAAATGGCAAAAGCCCCAGG 200398544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721080493600