Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq36 170 2e-37 seq47 132 5e-26 seq33 120 3e-22 seq1 93.3 4e-14 seq58 84.2 2e-11 >seq36 Length=28007247 Score = 170 bits (188), Expect = 2e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| ||||||||| |||| || || ||| Sbjct 6676618 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 6676559 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | |||||||| ||||| ||| | ||||| Sbjct 6676558 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCA 6676500 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||||| || ||||| |||||||| || | |||||||| ||||||||| Sbjct 6676499 GCAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 6676440 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| ||||| || ||| ||||| ||||||| || Sbjct 6676439 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGGGGTGG 6676392 Score = 170 bits (188), Expect = 2e-37 Identities = 177/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || ||||| || || |||||||| ||||||||| |||| || || | Sbjct 6677527 AAAGATGCAGATCTTTGTAAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGCC 6677468 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 || |||| | | | | | || | || || | |||||||||||||| ||| | || Sbjct 6677467 CAGTGACACCATTGAGAATGTAAAAGCCAAGATCCAGGACAAAGAGGGCATTCCCCCTGA 6677408 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | || |||| || ||||| |||||||| || | |||||||| |||||| Sbjct 6677407 CCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTA 6677348 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| |||| |||||||| ||| ||||| ||||||| ||| Sbjct 6677347 CAACATCCAGAAGGAGTCCACCCTGCATCTGGTGCTGCGCCTGAGGGGTGGC 6677296 >seq47 Length=18085138 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || || ||||| ||||||||| | || || || || Sbjct 16075472 AATATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCC 16075413 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | | |||| || || | |||||||| ||||| ||| | ||| Sbjct 16075412 AGTGACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGAC 16075353 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || |||| || ||||| |||||||| || | |||||||| |||||| Sbjct 16075352 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTAC 16075293 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||| |||| ||||| || ||| |||| | ||||| ||| Sbjct 16075292 AACATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGTCTCAGGGGTGGC 16075242 >seq33 Length=109106476 Score = 120 bits (132), Expect = 3e-22 Identities = 95/114 (83%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||||| || ||||| ||||| ||||| || |||||| | || |||| ||| Sbjct 25987909 GAGCCGCTGCTGCGGGACAACCCGCGCCGCTTCGTCATCTTCCCCGTGCAGTACCACGAC 25987850 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 |||||| |||||||| ||||| ||||| || |||||||||| |||||||||| Sbjct 25987849 GTGTGGCAGATGTACAAGAAGGCTGAGGCCTCCTTCTGGACCGCCGAGGAGGTG 25987796 >seq1 Length=270692262 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || || || || | ||||| || || ||| || |||||||||| Sbjct 235935992 TGGTTGCCTTTGCTGCAGTGGAAGGAATTTTCTTCTCAGGATCTTTTGCTGCCATATTTT 235935933 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||| ||||| || ||||||||| ||| |||||||| ||| | Sbjct 235935932 GGCTGAAGAAGAGAGGCCTGATGCCTGGACTGACTTTCTCCAATGAGCTCATTAGCAGAG 235935873 Query 117162 ACGAGG 117167 |||||| Sbjct 235935872 ACGAGG 235935867 >seq58 Length=131974632 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||| ||| |||||||||| ||||| |||| |||||||| || ||||| || | ||| Sbjct 45117760 GGCATTCCCCCGGACCAGCAGCGACTGATCTTTGCGGGCAAGCAACTGGAAGATGGCCGC 45117701 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGG 40882 || || ||||||||||||||||||| || Sbjct 45117700 ACTCTGTCTGACTACAACATCCAGAAGGTGG 45117670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218749183200