Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-17 >seq1 Length=270692262 Score = 104 bits (114), Expect = 2e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 || ||||| || |||||| | || | || ||||| || ||||| || |||||||| ||| Sbjct 186506143 GTCACATGAGCAATCATATACGTGAGCAGTGAATAACTGGCAATATTGAAAGGCACTCCT 186506202 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCA-TCACACACATA 97235 ||||||||||| | ||||| ||||| | ||| || ||||||| ||| | ||| ||||| Sbjct 186506203 AGTCCCATATCTCCAGATCTCTGATACAGCTGGCAAGAAAGCTCGCCATTTACA-ACATA 186506261 Query 97236 AAACTGACTCAATACATGACAGGGGGGCAACGCCAT 97271 || || | | ||||||| ||||| || ||||| Sbjct 186506262 GAATTGGCAGAGAGCATGACAAGGGGGTAAAGCCAT 186506297 Score = 102 bits (112), Expect = 6e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 97397 CTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTT 97456 |||||||||||||||||||||| ||||| ||||| |||||||||||||| | || |||| Sbjct 186510467 CTTGATATTCTGCTCCAAAATGTCTCCACTGGAAACCATAAACAGGTCCTAAATCCCCTT 186510526 Query 97457 CTTCTCTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAA 97516 | |||| | | |||||| | ||||| || | | |||||||| |||||||||| Sbjct 186510527 CCACTCTGTGAGTGAAACCTTGTTTATCCAAGAACTCACGTGATCCATTGGCATCCCAAA 186510586 Query 97517 T 97517 | Sbjct 186510587 T 186510587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346783704149900