Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq33 132 9e-26 >seq33 Length=109106476 Score = 132 bits (146), Expect = 9e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 51895 GCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATA 51954 || ||||||| |||||| | |||||||| || ||||||||||| || ||||||||||| Sbjct 62929224 GCTTTATGGTGGTACTACGTCTCCAAAGGAATTGAATACTTGGACACAGTATTTTTCATC 62929165 Query 51955 CTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTT 52014 || |||| |||||||| || | ||||| || ||||| |||||||||| || ||||| Sbjct 62929164 CTGCGGAAGAAATTTAACCAAATCAGTTTCCTTCACGTTTATCATCATTACACCATGTTC 62929105 Query 52015 ACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 || || | ||||| || || || ||| |||| ||||| || Sbjct 62929104 ACCCTGTGGTGGATTGGAATCAAGTGGGTTGCAGGAGGACA 62929064 Score = 102 bits (112), Expect = 2e-16 Identities = 104/133 (78%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 || |||||||||||||| ||||| | ||||| |||||| ||||||||| || ||||| Sbjct 62926608 GCTTTTTTTGGAGCTCACATAAATGCATTTATTCATGTTGTTATGTACATGTACTATGGA 62926549 Query 52117 ATGGCCGCTTGTGGTCCTAT-GTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 | || || ||||| |||| |||||||| ||| || ||||||||||| || | || || Sbjct 62926548 TTAGCTGCCTGTGGCCCTAAAGTTCAGAA-GTACCTCTGGTGGAAACGATACTTGACCAT 62926490 Query 52176 AATGCAGTTGGTA 52188 | | || |||||| Sbjct 62926489 ACTACAATTGGTA 62926477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923195992202800