Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq36 138 1e-27 seq58 98.7 1e-15 seq46 95.1 1e-14 >seq36 Length=28007247 Score = 138 bits (152), Expect = 1e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| ||||| ||| |||||| || || ||||| || | ||| || || | Sbjct 6677309 CGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 6677368 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| ||||| || || || | ||||||||| | || | || ||| ||| Sbjct 6677369 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCTTTG 6677428 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || ||| | || | | ||||| || | ||||| |||| |||||| Sbjct 6677429 TCCTGGATCTTGGCTTTTACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATG 6677488 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTAC 43189 || |||||||| || |||||||||||||| ||||| ||||| Sbjct 6677489 GTCTTGCCCGTCAGGGTCTTTACAAAGATCTGCATCTTTAC 6677529 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 6681076 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCAC 6681135 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 6681136 TATACTAACGAGGA 6681149 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || ||||||||||||||||||||||| ||||||||||| | ||||||||||||| Sbjct 22334405 CTCCCCGTCAGGGAATCGAACCCTGGTCTCCTGCGTGACAGGCAGGGATACTCACCACTA 22334464 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 22334465 TACTAACGAGGA 22334476 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 6683253 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 6683312 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 6683313 TACTAACGAGGA 6683324 >seq58 Length=131974632 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 19487596 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 19487537 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 19487536 TACTAACGAGGA 19487525 >seq46 Length=143779068 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 55643631 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 55643572 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 55643571 TACTAACGAGGAGTG 55643557 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||| Sbjct 57211013 TTTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 57210954 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 57210953 CTATACTAACGAGGA 57210939 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 57211937 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 57211996 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 57211997 TACTAACGAGGA 57212008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817099659600