Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq33 95.1 1e-14 seq1 82.4 7e-11 >seq33 Length=109106476 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || ||||| || | ||| || ||||| || || || ||||||| ||||| ||| || Sbjct 25982269 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 25982328 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | |||||| || | ||||| || ||||||||||| || ||||| ||||| ||||| || Sbjct 25982329 AACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCT 25982388 Query 16379 AC 16380 || Sbjct 25982389 AC 25982390 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGA 16564 || ||||| ||||| || | ||| ||||||||||||||||| || ||||| || ||||| Sbjct 25985355 ATGTAAGTGTCTATAAGCAGACTGTACATTTCTGAATGAATGTTTTCCATGGCAATCTGG 25985414 Query 16565 AAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 || |||||||| || | |||||| | || || ||||| Sbjct 25985415 AAGCCATAAAAACAGCGAGCTTCTGTGATCTGCACTTC 25985452 >seq1 Length=270692262 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTT 15945 ||||||||| ||| | || ||||| || ||| | | | || ||| || | | Sbjct 235925773 TTAAAAATCTGCATCCAAAGTGAACACGTTGTCTGTAGTCTCTGCCATTACAGCAAAGCG 235925832 Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 ||||| || ||||| ||| |||||||| || || |||||||| | ||||||||| || Sbjct 235925833 CTGATACTCTGAAACTCGCTTCTCAAAGAAGTTGGTCTTTCCTTCCAGTGAAATATTCTC 235925892 Query 16006 CATAAAATCAAAAGGATTTTTTG 16028 ||| ||||||||||| |||| || Sbjct 235925893 CATGAAATCAAAAGGGTTTTCTG 235925915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511595302000