Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq26 262 3e-65 seq21 114 9e-21 >seq26 Length=42306551 Score = 262 bits (290), Expect = 3e-65 Identities = 680/1030 (66%), Gaps = 11/1030 (1%) Strand=Plus/Minus Query 107603 GCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAA 107662 |||| ||| ||||| | || | ||||| ||| | || ||||| | ||||| | Sbjct 11107853 GCGGCAGCCGCTCACGCCCGCCGACTACCTGAACCTGACGGCGGACTGCGCGCGCTACCG 11107794 Query 107663 GGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGC 107722 |||| || ||||| ||| | | ||||| | || ||| | |||||| | || Sbjct 11107793 CGCCCGGCGGCGCTTCATGCAGGTGGCGCTGAGCGAGGAGGAGGCGGCCTTCCCGCTCGC 11107734 Query 107723 CTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTA 107782 || ||| ||||| |||| || | | || || || || || ||||| ||| |||| Sbjct 11107733 CTTCTCCATGGTCATCCACGACCAACTGGAGCTGTTCGAGCGCCTCCTGCGCGCCCTGTA 11107674 Query 107783 TGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGA-GACTTTCAAAG 107841 || || |||||| | ||||| || ||||| || | ||| | || | ||||| | Sbjct 11107673 CGCGCCGCAGAACGTGTACTGCGTGCACGTCGACGCCAAGGCGCCCGCCGACTTCCTGC- 11107615 Query 107842 AGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCC 107901 |||| || |||| | ||||||||||||| |||||| ||||||| | ||| | Sbjct 11107614 AGGCCGTGCGGGCCCTGGCCGCCTGCTTCCCCAACGTCTTCGTGGCCAGCCGGCTGGAGC 11107555 Query 107902 CGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGC 107961 || || || || |||||||| | |||| || ||||| ||||| ||||| ||| ||| Sbjct 11107554 GCGTCGTCTACGCGTCCTGGTCGCGCCTGCAGGCCGACCTCAACTGCATGGAGGACCTGC 11107495 Query 107962 TCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAA 108021 | | | | | ||| ||| ||| | || || || ||||| || ||||||||| | | Sbjct 11107494 TGCGCCGGCCCGAGCCCTGGCGCTACCTGCTCAACACCTGCGGCACCGACTTCCCCCTCA 11107435 Query 108022 AGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGT 108081 ||||||| |||||||| || | |||||| || || | || |||| ||||||| Sbjct 11107434 AGACCAACGCCGAGATCGTGCGGGCCCTGCAGGTGCTCCGTGGCCGCAACAACATGGAGT 11107375 Query 108082 CTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACA 108141 | ||| || || | ||| | |||||| |||| | ||||| | || | Sbjct 11107374 CGGAGCAGCCCTCAGCCATCAAGCGCCAGCGCTGGCGCTACCAGCACCAGGTGTCTGAAA 11107315 Query 108142 C----ACTGTAC--CCTACCAGCAAGATGAAGGACCCTCCCCC--TGATAATTTACCCA- 108192 | || || | |||||| || ||| ||| || || || | | | Sbjct 11107314 CTGGCACCGTGGTGCGCACCAGCGTGACCAAGAGCCCCCCGCCGCTGGGCAGCGCCGAAA 11107255 Query 108193 TGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACA 108252 ||||||| || |||||||| | |||| | || | |||||| | || ||| | || | Sbjct 11107254 TGTTCACGGGCAATGCCTACATAGTGGTGACGCGGGACTTTGTGCGCCACGTCCTGGAGA 11107195 Query 108253 ACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACC 108312 ||| | | || | ||| | | |||| | | ||||| || ||||| ||||| || Sbjct 11107194 GCCCCGAGGCGCAGCGCCTGCTGGCCTGGGCCCAGGACACGTACAGCCCGGACGAGCATG 11107135 Query 108313 TCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGT 108372 | |||||||| || ||||| ||| | |||| ||||| | || | || ||||| Sbjct 11107134 TGTGGGCCACGCTACAGCGCCTGCCGGGCGTGCCAGGCTCCTTGCCGCCCAACAACAAGT 11107075 Query 108373 ATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAG 108432 | || | || ||||||| ||| | || | | |||||||||||||||| ||||| | Sbjct 11107074 ACCAGCTGTCCGACATGAACGCCCTGGCACGCTTAGTCAAGTGGCAGTACCTGGAGGGCG 11107015 Query 108433 ATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCA 108492 | | | |||||| || || | |||||| | || | || || |||||||||| Sbjct 11107014 ACATAATGCGGGGGGCACCCTACCCGCCCTGCACCGGCACGCACCGCCATGCCATCTGCA 11106955 Query 108493 TTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGT 108552 | ||||| ||||||||| |||||| |||||| | || ||||| |||| ||||||| Sbjct 11106954 TCTACGGCCTGGGGGACCTGCCCTGGATGCTCCAGCAGCAACACCTGCTGGCCAACAAGT 11106895 Query 108553 TTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGG 108612 | |||| ||| |||||||| | | | |||||| | || ||| |||| || || ||| Sbjct 11106894 TCGACCTGAGTGTGGATGAGCAGGCGGTCCAGTGCCTGGAGGAGCACCTGCGCCACCAGG 11106835 Query 108613 CCATCTATGG 108622 | ||| ||| Sbjct 11106834 CGCTCTTTGG 11106825 >seq21 Length=203625132 Score = 114 bits (126), Expect = 9e-21 Identities = 276/413 (67%), Gaps = 6/413 (1%) Strand=Plus/Minus Query 107722 CCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGT 107781 |||||| || ||| | || | || ||||| | | ||| ||||| | | ||| ||| Sbjct 8816417 CCTACTTCATAGTGATTCACAACAAAATTGAGATGTGTGAGAGGCTGTTTCCGGCCCTGT 8816358 Query 107782 ATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAG 107841 || |||| ||||| | | |||| |||| | |||| ||| || | ||| | || | Sbjct 8816357 ATACCCCACAGAAGCTCTGCTGTATCCATATAGATGCCAAGCTCCTAAGGACCTCCAGA- 8816299 Query 107842 AGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCC 107901 |||| || | | ||| | ||||||||||||||||| ||||||| || || Sbjct 8816298 AGGCAGTACATGGAATTGCATTGTGCTTCCCCAATGTCTTTTTGGCCAGCAAACTGAAGT 8816239 Query 107902 CGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGC 107961 |||||| |||| |||||||| | | || || || | |||| ||||||||||||| Sbjct 8816238 GGGTGGTCCATGCATCCTGGTCAATGCTTCAGGCCAACATCAACTCCATGGAAGACTTGC 8816179 Query 107962 TCCAG-AGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATA 108020 ||| | | || ||| || ||| | | | | ||||||||||| | |||| |||| Sbjct 8816178 TCCTGCATCT-AGTTCCCTGGCAATTCCTCCTGAATACATGTAGCTTTGACTCTGCCATC 8816120 Query 108021 AAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAG 108080 |||| |||| || | || ||| ||||| ||| | |||| | | ||||| ||||| Sbjct 8816119 AAGATCAATTCCAAAATCCTCCAAGCCCTGAAGCTTCTGAAAGTGGAAAACAGCCTGGAG 8816060 Query 108081 TCTGAGGTACCTTCTGAGTCCaaaaa---aaaTCGCTGGAAATACCGCTATGA 108130 | || || || ||| |||| || |||||| ||| | || ||||| Sbjct 8816059 CCAGAAAAGCCCTCAGAGGCCAAGAAGTTCCATCGCTCGAAGTTCCCTTATGA 8816007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348268502883180