Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq33 114 1e-20 seq1 96.9 3e-15 >seq33 Length=109106476 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 ||||||||||||| || || || || ||||| || | ||| ||||| ||||||| ||| | Sbjct 25982267 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 25982326 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | |||||||| || | || || || || |||||||| ||||| || ||||| ||||| | Sbjct 25982327 TCAACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 25982386 Query 14346 CTATTAATCGTTCTCC 14361 ||| || |||||||| Sbjct 25982387 CTACTACACGTTCTCC 25982402 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 13895 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13954 || || || || ||||| | |||||||| | ||||| || ||||||||||| || || Sbjct 25980931 TTCGACATGACTCCCATCCTCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTTGTCTTG 25980990 Query 13955 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATT 13992 ||||| ||||| || || |||||||| ||||||||||| Sbjct 25980991 CCTTCAAGTGAAATGTTCTCCATAAAGTCAAATGGATT 25981028 Score = 82.4 bits (90), Expect = 7e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533 ||||| || || ||||| | || |||||||| || || ||||||||||| || ||||| Sbjct 25985355 ATGTAAGTGTCTATAAGCAGACTGTACATTTCTGAATGAATGTTTTCCATGGCAATCTGG 25985414 Query 14534 AAACCATAAAAACATCTAGCTTCTG 14558 || ||||||||||| | |||||||| Sbjct 25985415 AAGCCATAAAAACAGCGAGCTTCTG 25985439 >seq1 Length=270692262 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||| ||||| ||||| || || || || || || | ||| ||||||| |||| || | Sbjct 235935867 CCTCGTCTCTGCTAATGAGCTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 235935926 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||||||||| ||||| || ||||| || ||||| ||||| || ||||||||||| | Sbjct 235935927 TCAGCCAAAATATGGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACTGCAGCAAAGG 235935986 Query 14346 C 14346 | Sbjct 235935987 C 235935987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482345177947600