Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1 134 2e-26 seq46 109 7e-19 seq33 105 9e-18 seq21 89.7 7e-13 >seq1 Length=270692262 Score = 134 bits (148), Expect = 2e-26 Identities = 127/161 (79%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 36156 AACATGCGAAAT-CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 36214 |||||| | ||| | | |||| |||||||||| ||||| | || ||||| || || Sbjct 235935842 AACATGTGTAATGCTCTATGTATTACCTCGTCTCTGCTAATGAGCTCATTGGAGAAAGTC 235935901 Query 36215 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAG 36274 ||||| ||||| ||||| | ||| || ||||||||||||| ||||| ||||| || ||| Sbjct 235935902 AGTCCAGGCATCAGGCCTCTCTTCTTCAGCCAAAATATGGCAGCAAAAGATCCTGAGAAG 235935961 Query 36275 AAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC 36315 ||||||||||| ||||| |||||||||| | |||||| || Sbjct 235935962 AAAATTCCTTCCACTGCAGCAAAGGCAACCACTCTCTCCCC 235936002 >seq46 Length=143779068 Score = 109 bits (120), Expect = 7e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 ||| || ||||| || | |||| | | | ||| || | |||||||||||||||||| Sbjct 82078746 TTACTTTTTATTGAATGCCTCCAGTAAACGCAGCAGGTGTAGGAACAGATTGATGATATC 82078687 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 ||| |||| ||||| || || | | ||| |||||||| || ||||| || || | | Sbjct 82078686 CAAATAGAGGTTGATTGAAGCCAGTATATACTCTTCAGGGGACAGCTTGTGCATCACCAA 82078627 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 || |||||||| || || ||||| ||||| | ||| || ||| ||| | | ||||| Sbjct 82078626 ATGAGTGTCATAAATGATAAATCCACAGAACAGAAGAGCTCCACCAGCTGCAAATACCAG 82078567 Query 9407 CTCCACTGTTTCACT 9421 |||||||| || || Sbjct 82078566 TTCCACTGTCTCGCT 82078552 Score = 107 bits (118), Expect = 3e-18 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 || ||||||| ||| |||||||||||||| || || |||||||||||||| || ||||| Sbjct 82075821 CCAGCTCCAAATTTGCTGAAATCTCTCTTCGACTGCAGAGTATATGCAGTTAGCCCAAGA 82075762 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAA 9593 ||||| |||||||| || || |||||||| | || | |||||||||||| Sbjct 82075761 AACACAGCAGTAGTAAGAATAAAAGCTTGTAGGACAATGGATACATCATAGAAA 82075708 >seq33 Length=109106476 Score = 105 bits (116), Expect = 9e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| || | || || ||||| |||||||| ||||||| || | || | Sbjct 25982267 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 25982326 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | | |||||| ||||| ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 25982327 TCAACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 25982386 Query 36300 C 36300 | Sbjct 25982387 C 25982387 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||| | || || || || | ||||| |||||||| |||||||||||||| ||||| Sbjct 25985348 ATCTTTTATGTAAGTGTCTATAAGCAGACTGTACATTTCTGAATGAATGTTTTCCATGGC 25985407 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 || || || || || ||||| | ||| || || ||||| |||||| Sbjct 25985408 AATCTGGAAGCCATAAAAACAGCGAGCTTCTGTGATCTGCACTTCT 25985453 >seq21 Length=203625132 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||| ||||| || | |||| || ||||| || ||||||||||| || || | Sbjct 200389014 ACCTGAAACTCTCCTGAGAGGACTCGGCGTGTGTAGATGTTACTGGTATAGGGCTCGATG 200389073 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 || |||||||| |||||||| ||||| || || ||||| ||||| || | | | || Sbjct 200389074 GATTCATTATTGCCCAAAATCTGAGCCGTGGAAGCAGTTGGCATTGGAGAAAGGAGCAAG 200389133 Query 65301 CTATTTCTAAGACCGTA 65317 || || |||| |||||| Sbjct 200389134 CTGTTCCTAACACCGTA 200389150 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119 || |||||||| ||||||||||||||||| || || | || | || || | || || Sbjct 200398399 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTAGCTCGCTGC 200398458 Query 66120 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGT 66179 ||||| || || || ||||| || | ||| || ||| | | ||||| | |||||||| Sbjct 200398459 TCCTCCTTCCCGGTGTTCTTCTTCAAATCCAGAAACTCAAAGATATCCAAGTGCCACGGC 200398518 Query 66180 TCCAAGTATATGGCCATAACTCCAGG 66205 |||| ||| ||||| | | | ||||| Sbjct 200398519 TCCAGGTAAATGGCAAAAGCCCCAGG 200398544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172224098800