Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1 132 7e-26 seq33 116 5e-21 seq21 96.9 5e-15 >seq1 Length=270692262 Score = 132 bits (146), Expect = 7e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| ||||| || || ||||| || || ||||| ||||| ||||| | ||| | Sbjct 235935867 CCTCGTCTCTGCTAATGAGCTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 235935926 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||||||||||| ||||| || || || ||||| |||||||| ||||| ||||||| Sbjct 235935927 TCAGCCAAAATATGGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACTGCAGCAAAGG 235935986 Query 50102 CAACAAGTCTCTCTCC 50117 |||| | |||||| || Sbjct 235935987 CAACCACTCTCTCCCC 235936002 >seq33 Length=109106476 Score = 116 bits (128), Expect = 5e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| |||||||| || || || || ||||| |||||||| ||||||| || | || | Sbjct 25982267 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 25982326 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | |||||| ||||| ||||| || |||||||||||||||||||| ||||| ||||| | Sbjct 25982327 TCAACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 25982386 Query 50102 CAAC 50105 | || Sbjct 25982387 CTAC 25982390 Score = 96.9 bits (106), Expect = 5e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||| | ||||| || || | ||||| |||||||| |||||||||||||| ||||| Sbjct 25985348 ATCTTTTATGTAAGTGTCTATAAGCAGACTGTACATTTCTGAATGAATGTTTTCCATGGC 25985407 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 ||||| || || || ||||| | ||| || || |||||||||||| Sbjct 25985408 AATCTGGAAGCCATAAAAACAGCGAGCTTCTGTGATCTGCACTTCT 25985453 >seq21 Length=203625132 Score = 96.9 bits (106), Expect = 5e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 || |||||||| ||||||||||||||||| || || | || || || || | || ||| Sbjct 200398399 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTAGCTCGCTGC 200398458 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 ||||| || || || ||||| || | ||| || ||| | | ||||| | |||||||| Sbjct 200398459 TCCTCCTTCCCGGTGTTCTTCTTCAAATCCAGAAACTCAAAGATATCCAAGTGCCACGGC 200398518 Query 80059 TCCAAGTATATGGCCATAACTCCCGGTC 80086 |||| ||| ||||| | | | || |||| Sbjct 200398519 TCCAGGTAAATGGCAAAAGCCCCAGGTC 200398546 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||| ||||| || | |||| || ||||| || ||||||||||| || || | Sbjct 200389014 ACCTGAAACTCTCCTGAGAGGACTCGGCGTGTGTAGATGTTACTGGTATAGGGCTCGATG 200389073 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 ||||||||||| |||||||| ||||| || || || |||||||| || | | | || Sbjct 200389074 GATTCATTATTGCCCAAAATCTGAGCCGTGGAAGCAGTTGGCATTGGAGAAAGGAGCAAG 200389133 Query 79180 CTATTTCTAAGACCGTA 79196 || || |||| |||||| Sbjct 200389134 CTGTTCCTAACACCGTA 200389150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268171514800