Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq36 154 3e-32 seq33 134 3e-26 >seq36 Length=28007247 Score = 154 bits (170), Expect = 3e-32 Identities = 174/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || || || ||||| || || ||||| Sbjct 6677294 ATGCCACCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCG 6677353 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || |||||||| || |||||||| || ||||| Sbjct 6677354 GACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGG 6677413 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || ||||| ||||| ||||| ||||||||||| || | ||| || || || || Sbjct 6677414 GGAATGCCCTCTTTGTCCTGGATCTTGGCTTTTACATTCTCAATGGTGTCACTGGGCTCC 6677473 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || || ||||| || || || || |||||||| |||||||| || Sbjct 6677474 ACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTTACAAAGATCTGCATCTT 6677526 >seq33 Length=109106476 Score = 134 bits (148), Expect = 3e-26 Identities = 127/162 (78%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||| || |||| |||||||| |||||| | || || | || |||||| Sbjct 62929224 GCTTTATGGTGGTACTACGTCTCCAAAGGAATTGAATACTTGGACACAGTATTTTTCATC 62929165 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || || ||||||||||| ||||| ||||| || || || |||||||||| || ||||| Sbjct 62929164 CTGCGGAAGAAATTTAACCAAATCAGTTTCCTTCACGTTTATCATCATTACACCATGTTC 62929105 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAA 78649 || || | ||||| || || || ||| | |||||||||||| Sbjct 62929104 ACCCTGTGGTGGATTGGAATCAAGTGGGTTGCAGGAGGACAA 62929063 Score = 107 bits (118), Expect = 4e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | |||| |||||||| || || ||||| || |||||||| || |||||||| Sbjct 25982402 GGAGAACGTGTAGTAGCTTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 25982343 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || |||||||||||||||||||| | ||||| ||| | ||||| ||||| || | Sbjct 25982342 TCCATTTTTTGGTTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAGCTC 25982283 Query 269246 ATAAGCAGGGACGA 269259 || || || || || Sbjct 25982282 ATCAGTAGAGATGA 25982269 Score = 96.9 bits (106), Expect = 8e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 268916 CAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAAT 268975 ||||| || ||||| | ||||| | |||||||| || |||||||| || || ||||| Sbjct 25985455 CAAGAAGTGCAGATCACAGAAGCTCGCTGTTTTTATGGCTTCCAGATTGCCATGGAAAAC 25985396 Query 268976 ATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGAT 269023 ||||||||||| ||||||||||| | ||||| ||||| ||| | ||| Sbjct 25985395 ATTCATTCAGAAATGTACAGTCTGCTTATAGACACTTACATAAAAGAT 25985348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397367339560