Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq40 149 9e-31 seq22 147 3e-30 >seq40 Length=20244435 Score = 149 bits (164), Expect = 9e-31 Identities = 183/250 (73%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 8691 ACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCC 8750 |||| |||| | |||||| | || || || || || | ||| ||| || | | Sbjct 17400610 ACGGGCACCGTCGCACGTTGTTGCACACCAGCTTCTCGAGCGATGCTGTCTGCACCAGCG 17400551 Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 | || ||| | | ||||||||||||||||| |||||||| | |||||||||||| || Sbjct 17400550 CGAAGCCCGTGGCGCCGCCGAAGGTGCTGGGCTTCCAGTACTCGGGGGAGCAGATGGGGT 17400491 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 || ||| || || |||||||| || || ||||| | ||| | |||||||| ||||||| Sbjct 17400490 TCCCCAGCAGCCCCTTGAGGGAGAAGGGGGCCCCGATCTCCACCATGCTCTCCCCGAAGA 17400431 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGT 8930 ||||||||| | ||||| |||| || | || | ||| ||||||| || ||||||| Sbjct 17400430 TGGCGTTGGCTTGCGGCTTCTCCAGCAGCAGCCCCGGGTAGAACTCCAGGGCGTCGATGT 17400371 Query 8931 CTCCGTAAAG 8940 | ||||| || Sbjct 17400370 CGCCGTACAG 17400361 Score = 100 bits (110), Expect = 4e-16 Identities = 172/249 (69%), Gaps = 8/249 (3%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || || | || ||| || || ||||| || || || ||||| |||||| || || Sbjct 17398845 TCACCAATGAGGACGAGCCGGGTCGTCTGGAAGAGCTGCTCGTCGCTCCATGTCGGGTGC 17398786 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || | ||||| | ||||| || | |||||| || | |||||||| || ||||||||| Sbjct 17398785 TCCTGCTTCAGCAGGTCGCAGACGCGGTTGTGCTCGCGGAGCCAGAGGGTCGCGTACATC 17398726 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGG-- 9787 || || || |||| || || || |||| || || || ||||| ||| | |||| Sbjct 17398725 ATCAGCCCGGGCAGGAGCCCGAAGACCTCCTGGCCCACGGCCAGGCGCTGCTCCTCGGCG 17398666 Query 9788 --GCACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACAT 9845 || || ||| ||||||||||||||| || | | |||| ||| || |||| Sbjct 17398665 GTGCCGTTGGGG----TAGATCATGTGCACCGGGGCCTGGAGCACCGTGGGCGGGTACAC 17398610 Query 9846 TTCACCGTC 9854 || ||||| Sbjct 17398609 CTCCCCGTC 17398601 >seq22 Length=66201059 Score = 147 bits (162), Expect = 3e-30 Identities = 212/299 (71%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 8690 AACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATC 8749 || ||||| || || || ||| | ||||| || || | | ||| | ||||| || Sbjct 26666721 AAGGGACAACCCTTTACATTGTTGCAGACAAGTTTTTGCAGGGAGGCAGTGTTGACTATT 26666662 Query 8750 CCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACG 8809 |||| || || ||| || || ||||| || |||||||| | || |||||||| | Sbjct 26666661 TCAAAGCCTACTCTTCCACCAAAAGTGCTAGGCTTCCAGTACTCAGGAGAGCAGATAGCA 26666602 Query 8810 TTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAG 8869 || |||| |||||||| | || || || || || ||||| | ||| ||||||| ||| Sbjct 26666601 TTTCCCATCAGGCCTTTCAACGAGAATGGTGCTCCAAGCTCTACCATGGTCTCACCAAAG 26666542 Query 8870 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATG 8929 ||||| |||||||||||||||||||| | || | |||| ||||| || || ||| Sbjct 26666541 ATGGCTCCTGGACGGGGCTTTTCCACCAACAGACCAGGATACAGCTCCATTGCATCAATG 26666482 Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGTTTTATTAATAAA 8988 ||||| ||||| | | ||| || || ||||| ||||||||| |||||| ||| Sbjct 26666481 TCTCCATAAAGCTCTTCCAATTCAGCTGCCATTTCTTTTTCTCCTAAAATATTAACAAA 26666423 Score = 102 bits (112), Expect = 1e-16 Identities = 167/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| || || || || | ||||| ||| |||||||||||| || | || || Sbjct 26664359 ATGAGTCTGGTAGTTTGGAATAACTGTTCATCATCCCATTCTGGATGCTCCTGCTTAAGG 26664300 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || || | |||||| ||||||||||| |||||||| |||||||| | ||| || Sbjct 26664299 ATGTCACAGACCCGGTTGTGCTCCCTGAGCCATATAGTAGCATACATCATTAAACCTGGG 26664240 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 ||||| ||||| | || || || |||| | || | | || || || | |||||| Sbjct 26664239 ACCAGACCAAACACTTCCTGTCCTACAGAGAATCGTAGGTGCTCAGGAACATGAGGAGGA 26664180 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 || | ||| | | | ||| || || || || |||||||| || |||| ||| Sbjct 26664179 TATAGCATTTCTGCTTCAGTATCCTTCACTATTGGAGGGTACATTTCTCCACCAATCATC 26664120 Query 9862 T 9862 | Sbjct 26664119 T 26664119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708524180040800