Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1 138 1e-27 seq33 111 2e-19 seq21 93.3 5e-14 >seq1 Length=270692262 Score = 138 bits (152), Expect = 1e-27 Identities = 112/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| ||||| || || ||||| || || ||||| ||||| ||||| | ||| | Sbjct 235935867 CCTCGTCTCTGCTAATGAGCTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 235935926 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||||||||||| ||| || ||||| || ||||| |||||||| ||||||||||||| Sbjct 235935927 TCAGCCAAAATATGGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACTGCAGCAAAGG 235935986 Query 33446 CAATAAGTCTCTCTCC 33461 ||| | |||||| || Sbjct 235935987 CAACCACTCTCTCCCC 235936002 >seq33 Length=109106476 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| |||||||| || || || || ||||| |||||||| ||||||| || | || | Sbjct 25982267 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 25982326 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | | |||||| ||||| || || || |||||||||||||||||||| ||||| ||||| | Sbjct 25982327 TCAACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 25982386 Query 33446 C 33446 | Sbjct 25982387 C 25982387 Score = 95.1 bits (104), Expect = 2e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||||| | ||||| || || | ||||| |||||||| |||||||||||||| ||||| Sbjct 25985348 ATCTTTTATGTAAGTGTCTATAAGCAGACTGTACATTTCTGAATGAATGTTTTCCATGGC 25985407 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 ||||| || || || ||||| | ||| || || ||||| |||||| | ||| || || Sbjct 25985408 AATCTGGAAGCCATAAAAACAGCGAGCTTCTGTGATCTGCACTTCTTGGCTAAAACGCTC 25985467 Query 33684 CGCCAAA 33690 | || || Sbjct 25985468 CACCTAA 25985474 >seq21 Length=203625132 Score = 93.3 bits (102), Expect = 5e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 63216 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63275 || |||||||| ||||||||||||||||| || || | || || || || | || || Sbjct 200398399 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTAGCTCGCTGC 200398458 Query 63276 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63335 ||||| || || || ||||| || | ||| || ||| | | ||||| | |||||||| Sbjct 200398459 TCCTCCTTCCCGGTGTTCTTCTTCAAATCCAGAAACTCAAAGATATCCAAGTGCCACGGC 200398518 Query 63336 TCCAAGTATATGGCCATAACTCCAGG 63361 |||| ||| ||||| | | | ||||| Sbjct 200398519 TCCAGGTAAATGGCAAAAGCCCCAGG 200398544 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||| ||||| || | |||| || ||||| || ||||||||||| || || | Sbjct 200389014 ACCTGAAACTCTCCTGAGAGGACTCGGCGTGTGTAGATGTTACTGGTATAGGGCTCGATG 200389073 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 || |||||||| |||||||| ||||| || || ||||| ||||| || | | | || Sbjct 200389074 GATTCATTATTGCCCAAAATCTGAGCCGTGGAAGCAGTTGGCATTGGAGAAAGGAGCAAG 200389133 Query 62457 CTATTTCTAAGACCGTA 62473 || || |||| |||||| Sbjct 200389134 CTGTTCCTAACACCGTA 200389150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946654921200