Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq36 122 7e-23 seq47 114 1e-20 >seq36 Length=28007247 Score = 122 bits (134), Expect = 7e-23 Identities = 159/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| |||||| ||||||||||| || ||||||||||||| || ||| | | || Sbjct 6677311 CAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 6677370 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||| ||| ||||| || | |||||||||||| Sbjct 6677371 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCTTTGTC 6677430 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || ||| || || | | | ||||| | ||||||| || | ||||||| Sbjct 6677431 CTGGATCTTGGCT--TTTACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATG 6677488 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || || || ||||| || || ||||| |||||||| || Sbjct 6677489 GTCTTGCCCGTCAGGGTCTTTACAAAGATCTGCATCTT 6677526 Score = 114 bits (126), Expect = 1e-20 Identities = 170/237 (72%), Gaps = 7/237 (3%) Strand=Plus/Plus Query 16702 CATTTACC-CTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGT 16760 || ||||| | |||| || | ||| |||| ||||| ||||||||||| || ||||||| Sbjct 6676386 CAGTTACCACCCCTC--AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGT 6676443 Query 16761 AGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGT 16820 |||||| || ||| | | || |||| || ||||| ||| | || |||| ||| |||| Sbjct 6676444 AGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGT 6676503 Query 16821 CCACAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCC 16878 | || | ||| |||||||| || || || |||||| | | | ||||| | Sbjct 6676504 CAGGGGGAATGCCTTCTTTGTCCTGGATCTTGGC--CTTCACGTTCTCAATGGTGTCACT 6676561 Query 16879 GGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||| || | ||||||||| || || ||||| || || || || |||||||| Sbjct 6676562 GGGCTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 6676618 >seq47 Length=18085138 Score = 114 bits (126), Expect = 1e-20 Identities = 158/219 (72%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| ||||| ||||| || ||||||||||| | || ||| | | || Sbjct 16075257 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 16075316 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||| ||| ||||| || | ||| |||||||| Sbjct 16075317 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 16075376 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || |||||| | | | ||||| | ||||||| |||| ||||||| Sbjct 16075377 CTGGATCTTAGC--CTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 16075434 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || || || ||||| || || ||||| |||||||| ||| Sbjct 16075435 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATATTG 16075473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405087654409300