Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq63 118 7e-22 seq25 118 7e-22 seq33 113 3e-20 seq24 113 3e-20 seq66 104 2e-17 seq27 104 2e-17 seq64 98.7 7e-16 seq36 93.3 3e-14 seq58 86.0 4e-12 seq1 84.2 1e-11 seq47 82.4 5e-11 >seq63 Length=80678228 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGT 25956 |||||||||||||||||||||||||| ||||||||||| | ||| | |||||||| Sbjct 23829845 AAGCCCGTTCCCTTGGCTGTGGTTTCTCTAGATAGTAGGTGGGGACAGTAGGAATCTCGT 23829786 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 23829785 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 23829751 Score = 86.0 bits (94), Expect = 4e-12 Identities = 74/92 (80%), Gaps = 5/92 (5%) Strand=Plus/Minus Query 25905 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAA 25959 || ||||||||||||||||||| ||||||||||| || || || |||||| || | Sbjct 21483659 CCTGTTCCCTTGGCTGTGGTTTTGCTAGATAGTAAGTAAGGACAGTGGGAATCTCATTCA 21483600 Query 25960 TCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||| |||||| | |||| ||||||||||| || Sbjct 21483599 TCCATTCATGTGTGTCATTAATTAGATGATGA 21483568 >seq25 Length=45393205 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || ||||| || Sbjct 41955102 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTTGT 41955043 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||||| ||||||||||||||| || Sbjct 41955042 TCATCCATTCATGCGCATCACTAATTAGATGATGA 41955008 Score = 87.8 bits (96), Expect = 1e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 19956 CAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATT 20015 ||||||||||||||||||||||| |||||||||||| |||||||||||| | | || | Sbjct 42711734 CAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGTGCCAGTACT 42711793 Query 20016 TAGCCTTA 20023 |||||||| Sbjct 42711794 TAGCCTTA 42711801 >seq33 Length=109106476 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||| | Sbjct 8050634 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGGCAGTGGGAATCTCAT 8050693 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||| | ||||||||||||||| || Sbjct 8050694 TCATCCGTTCATGCACATCACTAATTAGATGATGA 8050728 >seq24 Length=75875076 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||||||||||||||||||||||||||||| ||||| ||||||||| | Sbjct 40361933 AAGCCCATTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGTAATCTCAT 40361874 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| ||||||||||||||||| || Sbjct 40361873 TCATCCATTCATGGACGTCACTAATTAGATGATGA 40361839 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||||||||||||||||||||||||||||| ||||| ||||||||| | Sbjct 40370924 AAGCCCATTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGTAATCTCAT 40370865 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| ||||||||||||||||| || Sbjct 40370864 TCATCCATTCATGGACGTCACTAATTAGATGATGA 40370830 >seq66 Length=60305753 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 44458507 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 44458448 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 44458447 GCCGGTATTTAGCCTTA 44458431 >seq27 Length=40567063 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct 30733646 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCAT 30733705 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 30733706 GCCAGTATTTAGCCTTA 30733722 >seq64 Length=84437661 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||| Sbjct 44916063 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTAACTATCAGTCTCGT 44916004 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 44916003 GCCGGTATTTAGCCTTA 44915987 >seq36 Length=28007247 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 |||||||| |||| |||| ||||| || || ||| |||||| || || ||||| || Sbjct 6676389 TTACCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCG 6676448 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 |||| || | || || | || || || ||||| || || | || || || | | Sbjct 6676449 GACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGG 6676508 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 || | ||||||||||||| || || |||||| |||| | || || | || Sbjct 6676509 GGAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCC 6676568 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || | || || || || ||||||| ||| |||||||| ||||||||| Sbjct 6676569 ACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 6676619 >seq58 Length=131974632 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||| |||||||||||| |||||||||||| |||| |||||| Sbjct 106751291 CTCTCTTTTCAAAGTTCTTCTCAACTTTCCCTTACGGTACTTGTTAACTATTGGTCTCAT 106751350 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 106751351 GCCGGTATTTAGCCTTA 106751367 >seq1 Length=270692262 Score = 84.2 bits (92), Expect = 1e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCT-ATCGGTCTCG 20005 |||||||||||||||||||||||||||||||| || ||| ||||| || |||||||| | Sbjct 204040762 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACAGTATTTGTTGACTAATCGGTCTTG 204040703 Query 20006 CGGTAATATTTAGCCTTA 20023 | | || ||||||||| Sbjct 204040702 TGTTGGTACTTAGCCTTA 204040685 Score = 82.4 bits (90), Expect = 5e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 19959 AGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTTAG 20018 |||||||||||||||||||| |||||||||||| |||| ||||||| | | ||||||| Sbjct 109682055 AGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATTGGTCTCGTGCTGGTATTTAG 109682114 Query 20019 CCTTA 20023 ||||| Sbjct 109682115 CCTTA 109682119 >seq47 Length=18085138 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| || | ||||| ||||| || || ||| ||||| || || ||||| |||||| Sbjct 16075243 CCACCCCTGAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 16075302 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | || || || ||||| || || | || || || | ||| Sbjct 16075303 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 16075362 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||||| || || ||||||||||| | || || | || || Sbjct 16075363 ATGCCTTCTTTGTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACC 16075422 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || || || || |||| ||| ||||| || |||||||| || Sbjct 16075423 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATATT 16075472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946914248170