Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1 134 2e-26 seq33 105 8e-18 seq21 93.3 5e-14 >seq1 Length=270692262 Score = 134 bits (148), Expect = 2e-26 Identities = 127/161 (79%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 32659 AACATGCGAAAT-CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 32717 |||||| | ||| | | |||| |||||||||| ||||| | || ||||| || || Sbjct 235935842 AACATGTGTAATGCTCTATGTATTACCTCGTCTCTGCTAATGAGCTCATTGGAGAAAGTC 235935901 Query 32718 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAG 32777 ||||| ||||| ||||| | ||| || ||||||||||||| ||||| ||||| || ||| Sbjct 235935902 AGTCCAGGCATCAGGCCTCTCTTCTTCAGCCAAAATATGGCAGCAAAAGATCCTGAGAAG 235935961 Query 32778 AAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC 32818 ||||||||||| ||||| |||||||||| | |||||| || Sbjct 235935962 AAAATTCCTTCCACTGCAGCAAAGGCAACCACTCTCTCCCC 235936002 >seq33 Length=109106476 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| |||||||| || | || || ||||| |||||||| ||||||| || | || | Sbjct 25982267 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 25982326 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | | |||||| ||||| ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 25982327 TCAACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 25982386 Query 32803 C 32803 | Sbjct 25982387 C 25982387 >seq21 Length=203625132 Score = 93.3 bits (102), Expect = 5e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 63071 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63130 || |||||||| ||||||||||||||||| || || | || || || || | || || Sbjct 200398399 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTAGCTCGCTGC 200398458 Query 63131 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63190 ||||| || || || ||||| || | ||| || ||| | | ||||| | |||||||| Sbjct 200398459 TCCTCCTTCCCGGTGTTCTTCTTCAAATCCAGAAACTCAAAGATATCCAAGTGCCACGGC 200398518 Query 63191 TCCAAGTATATGGCCATAACTCCAGG 63216 |||| ||| ||||| | | | ||||| Sbjct 200398519 TCCAGGTAAATGGCAAAAGCCCCAGG 200398544 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||| ||||| || | |||| || ||||| || ||||||||||| || || | Sbjct 200389014 ACCTGAAACTCTCCTGAGAGGACTCGGCGTGTGTAGATGTTACTGGTATAGGGCTCGATG 200389073 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 || |||||||| |||||||| ||||| || || ||||| ||||| || | | | || Sbjct 200389074 GATTCATTATTGCCCAAAATCTGAGCCGTGGAAGCAGTTGGCATTGGAGAAAGGAGCAAG 200389133 Query 62312 CTATTTCTAAGACCGTA 62328 || || |||| |||||| Sbjct 200389134 CTGTTCCTAACACCGTA 200389150 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 ||||||| | ||| || ||||||||||| | || || || || || || || || || | Sbjct 200405544 CACTAAACACTTTCTTGGTTTCTTTGTGCAAGTTGGAGACTGCGATCCTTGCTGCCAGGA 200405603 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || || |||| ||||| || || || | || || ||||| || |||| Sbjct 200405604 TGGCATAGTCGGGGTGTTTGGTAGTCAGGGTCGCAGCCGTCTCTGCAGCCAGTGTATCCA 200405663 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||||| || || ||||| | || | |||||||| || ||||| Sbjct 200405664 GCTCTACTGTGGTGACACCGCTGTAAAGACCTTGGATCACTTTCAT 200405709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631445572000